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Cluster: HRGMv2_2940_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2940_52 HRGMv2_2940_52_1 1 1596 + 3.A.3.2.21
CAZyme HRGMv2_2940_52 HRGMv2_2940_52_2 1668 2543 + CE4
TC HRGMv2_2940_52 HRGMv2_2940_52_3 2692 3450 + 3.A.1.16.4
TC HRGMv2_2940_52 HRGMv2_2940_52_4 3437 4258 + 3.A.1.17.6
pfam HRGMv2_2940_52 HRGMv2_2940_52_5 4255 5241 + NMT1 | NMT1_2
TC HRGMv2_2940_52 HRGMv2_2940_52_6 5296 6153 - 3.A.1.24.5
TC HRGMv2_2940_52 HRGMv2_2940_52_7 6292 6972 - 3.A.1.24.5
TC HRGMv2_2940_52 HRGMv2_2940_52_8 6976 7965 - 3.A.1.24.1
Gene ID: HRGMv2_2940_52_1
Type: TC
Location: 1 - 1596 (+)
Gene ID: HRGMv2_2940_52_2
Type: CAZyme
Location: 1668 - 2543 (+)
Gene ID: HRGMv2_2940_52_3
Type: TC
Location: 2692 - 3450 (+)
Gene ID: HRGMv2_2940_52_4
Type: TC
Location: 3437 - 4258 (+)
Gene ID: HRGMv2_2940_52_5
Type: pfam
Location: 4255 - 5241 (+)
Gene ID: HRGMv2_2940_52_6
Type: TC
Location: 5296 - 6153 (-)
Gene ID: HRGMv2_2940_52_7
Type: TC
Location: 6292 - 6972 (-)
Gene ID: HRGMv2_2940_52_8
Type: TC
Location: 6976 - 7965 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2940_52_4 vegetarian > omnivore 1.33650 0.00050
HRGMv2_2940_52_7 vegetarian > omnivore 1.11885 0.00050

🧭 Explore Read Mapping of CGC

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