Cluster: HRGMv2_2940_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2940
- CGC Family ID: CGCFAM_06818
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2940_47 | HRGMv2_2940_47_1 | 159 | 1067 | - | 2.A.7.3.52 |
| pfam | HRGMv2_2940_47 | HRGMv2_2940_47_2 | 1071 | 3521 | - | UvrD-helicase | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor |
| CAZyme | HRGMv2_2940_47 | HRGMv2_2940_47_3 | 3518 | 5014 | - | GH77 |
| TC | HRGMv2_2940_47 | HRGMv2_2940_47_4 | 5314 | 6252 | + | 2.A.19.5.1 |
| TC | HRGMv2_2940_47 | HRGMv2_2940_47_5 | 6305 | 7663 | - | 2.A.38.1.1 |
| TC | HRGMv2_2940_47 | HRGMv2_2940_47_6 | 7939 | 10866 | + | 3.A.1.122.13 |
Gene ID: HRGMv2_2940_47_1
Type: TC
Location: 159 - 1067 (-)
Type: TC
Location: 159 - 1067 (-)
Gene ID: HRGMv2_2940_47_2
Type: pfam
Location: 1071 - 3521 (-)
Type: pfam
Location: 1071 - 3521 (-)
Gene ID: HRGMv2_2940_47_3
Type: CAZyme
Location: 3518 - 5014 (-)
Type: CAZyme
Location: 3518 - 5014 (-)
Gene ID: HRGMv2_2940_47_4
Type: TC
Location: 5314 - 6252 (+)
Type: TC
Location: 5314 - 6252 (+)
Gene ID: HRGMv2_2940_47_5
Type: TC
Location: 6305 - 7663 (-)
Type: TC
Location: 6305 - 7663 (-)
Gene ID: HRGMv2_2940_47_6
Type: TC
Location: 7939 - 10866 (+)
Type: TC
Location: 7939 - 10866 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-103
Species
CAG-103 sp004556965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2940_47_5 | vegetarian > omnivore | 1.09547 | 0.00050 |