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Cluster: HRGMv2_2940_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2940_35 HRGMv2_2940_35_3 1898 2542 + 1.A.62.2.1
pfam HRGMv2_2940_35 HRGMv2_2940_35_4 2591 3763 + Cons_hypoth95 | MTS | tRNA_U5-meth_tr | PrmA | Methyltransf_15 | Methyltransf_31
peptidase HRGMv2_2940_35 HRGMv2_2940_35_5 3778 5001 + M20.UPD
CAZyme HRGMv2_2940_35 HRGMv2_2940_35_6 4998 6320 + GT76
STP HRGMv2_2940_35 HRGMv2_2940_35_7 6337 6882 + NUDIX
STP HRGMv2_2940_35 HRGMv2_2940_35_8 6976 8112 - Fer4
TC HRGMv2_2940_35 HRGMv2_2940_35_9 8309 9136 + 3.A.1.132.3
pfam HRGMv2_2940_35 HRGMv2_2940_35_10 9347 10408 - Exo_endo_phos
TC HRGMv2_2940_35 HRGMv2_2940_35_11 10477 10947 - 9.A.24.1.7
STP HRGMv2_2940_35 HRGMv2_2940_35_12 11108 12349 + Aminotran_1_2
TC HRGMv2_2940_35 HRGMv2_2940_35_13 12506 14275 - 3.A.1.5.1
Gene ID: HRGMv2_2940_35_3
Type: TC
Location: 1898 - 2542 (+)
Gene ID: HRGMv2_2940_35_4
Type: pfam
Location: 2591 - 3763 (+)
Gene ID: HRGMv2_2940_35_5
Type: peptidase
Location: 3778 - 5001 (+)
Gene ID: HRGMv2_2940_35_6
Type: CAZyme
Location: 4998 - 6320 (+)
Gene ID: HRGMv2_2940_35_7
Type: STP
Location: 6337 - 6882 (+)
Gene ID: HRGMv2_2940_35_8
Type: STP
Location: 6976 - 8112 (-)
Gene ID: HRGMv2_2940_35_9
Type: TC
Location: 8309 - 9136 (+)
Gene ID: HRGMv2_2940_35_10
Type: pfam
Location: 9347 - 10408 (-)
Gene ID: HRGMv2_2940_35_11
Type: TC
Location: 10477 - 10947 (-)
Gene ID: HRGMv2_2940_35_12
Type: STP
Location: 11108 - 12349 (+)
Gene ID: HRGMv2_2940_35_13
Type: TC
Location: 12506 - 14275 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2940_35_4 vegetarian > omnivore 1.26075 0.00050
HRGMv2_2940_35_7 vegetarian > omnivore 1.08871 0.00050

🧭 Explore Read Mapping of CGC

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