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Cluster: HRGMv2_2940_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2940_34 HRGMv2_2940_34_1 13 1221 - GH2
TC HRGMv2_2940_34 HRGMv2_2940_34_2 1215 2495 - 2.A.1.84.3
TC HRGMv2_2940_34 HRGMv2_2940_34_3 2824 4176 + 3.D.6.1.2
TC HRGMv2_2940_34 HRGMv2_2940_34_4 4173 5216 + 3.D.6.1.2
TC HRGMv2_2940_34 HRGMv2_2940_34_5 5209 5787 + 3.D.6.1.3
TC HRGMv2_2940_34 HRGMv2_2940_34_6 5801 6484 + 3.D.6.1.2
TC HRGMv2_2940_34 HRGMv2_2940_34_7 6488 7081 + 3.D.6.1.2
TC HRGMv2_2940_34 HRGMv2_2940_34_8 7095 7916 + 3.D.6.1.2
Gene ID: HRGMv2_2940_34_1
Type: CAZyme
Location: 13 - 1221 (-)
Gene ID: HRGMv2_2940_34_2
Type: TC
Location: 1215 - 2495 (-)
Gene ID: HRGMv2_2940_34_3
Type: TC
Location: 2824 - 4176 (+)
Gene ID: HRGMv2_2940_34_4
Type: TC
Location: 4173 - 5216 (+)
Gene ID: HRGMv2_2940_34_5
Type: TC
Location: 5209 - 5787 (+)
Gene ID: HRGMv2_2940_34_6
Type: TC
Location: 5801 - 6484 (+)
Gene ID: HRGMv2_2940_34_7
Type: TC
Location: 6488 - 7081 (+)
Gene ID: HRGMv2_2940_34_8
Type: TC
Location: 7095 - 7916 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2940_34_3 vegetarian > omnivore 1.02424 0.00050

🧭 Explore Read Mapping of CGC

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