Cluster: HRGMv2_2940_CGC1
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_2940
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2940_1 | HRGMv2_2940_1_12 | 10206 | 11756 | - | 2.A.66.1.40 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_13 | 11772 | 12563 | - | GT32 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_14 | 12576 | 13670 | - | GT2 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_15 | 13683 | 14732 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_16 | 14737 | 15729 | - | GT2 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_17 | 15737 | 16693 | - | GT2 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_18 | 16705 | 17733 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_19 | 17730 | 18632 | - | GT2 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_20 | 18650 | 19618 | - | GT2 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_21 | 19630 | 20658 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_22 | 20655 | 21782 | - | GT4 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_23 | 21815 | 22822 | - | GT2 |
| CAZyme | HRGMv2_2940_1 | HRGMv2_2940_1_24 | 22837 | 23655 | - | GT2 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_25 | 23667 | 24539 | - | Glycos_transf_2 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_26 | 24733 | 25872 | - | EpsG |
| TC | HRGMv2_2940_1 | HRGMv2_2940_1_27 | 26149 | 26976 | - | 8.A.42.1.6 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_28 | 26969 | 27202 | - | TTRAP |
| TC | HRGMv2_2940_1 | HRGMv2_2940_1_29 | 27217 | 29580 | - | 3.A.7.19.1 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_30 | 29634 | 36617 | - | MutS_I | ResIII | Eco57I |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_31 | 36659 | 37045 | - | TnpV |
| TC | HRGMv2_2940_1 | HRGMv2_2940_1_32 | 38057 | 40138 | - | 3.A.7.7.1 |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_33 | 40203 | 40913 | - | CD1107-like |
| pfam | HRGMv2_2940_1 | HRGMv2_2940_1_34 | 40906 | 41181 | - | DUF4315 |
| TC | HRGMv2_2940_1 | HRGMv2_2940_1_35 | 41191 | 43254 | - | 1.A.34.1.2 |
Gene ID: HRGMv2_2940_1_12
Type: TC
Location: 10206 - 11756 (-)
Type: TC
Location: 10206 - 11756 (-)
Gene ID: HRGMv2_2940_1_13
Type: CAZyme
Location: 11772 - 12563 (-)
Type: CAZyme
Location: 11772 - 12563 (-)
Gene ID: HRGMv2_2940_1_14
Type: CAZyme
Location: 12576 - 13670 (-)
Type: CAZyme
Location: 12576 - 13670 (-)
Gene ID: HRGMv2_2940_1_15
Type: pfam
Location: 13683 - 14732 (-)
Type: pfam
Location: 13683 - 14732 (-)
Gene ID: HRGMv2_2940_1_16
Type: CAZyme
Location: 14737 - 15729 (-)
Type: CAZyme
Location: 14737 - 15729 (-)
Gene ID: HRGMv2_2940_1_17
Type: CAZyme
Location: 15737 - 16693 (-)
Type: CAZyme
Location: 15737 - 16693 (-)
Gene ID: HRGMv2_2940_1_18
Type: pfam
Location: 16705 - 17733 (-)
Type: pfam
Location: 16705 - 17733 (-)
Gene ID: HRGMv2_2940_1_19
Type: CAZyme
Location: 17730 - 18632 (-)
Type: CAZyme
Location: 17730 - 18632 (-)
Gene ID: HRGMv2_2940_1_20
Type: CAZyme
Location: 18650 - 19618 (-)
Type: CAZyme
Location: 18650 - 19618 (-)
Gene ID: HRGMv2_2940_1_21
Type: pfam
Location: 19630 - 20658 (-)
Type: pfam
Location: 19630 - 20658 (-)
Gene ID: HRGMv2_2940_1_22
Type: CAZyme
Location: 20655 - 21782 (-)
Type: CAZyme
Location: 20655 - 21782 (-)
Gene ID: HRGMv2_2940_1_23
Type: CAZyme
Location: 21815 - 22822 (-)
Type: CAZyme
Location: 21815 - 22822 (-)
Gene ID: HRGMv2_2940_1_24
Type: CAZyme
Location: 22837 - 23655 (-)
Type: CAZyme
Location: 22837 - 23655 (-)
Gene ID: HRGMv2_2940_1_25
Type: pfam
Location: 23667 - 24539 (-)
Type: pfam
Location: 23667 - 24539 (-)
Gene ID: HRGMv2_2940_1_26
Type: pfam
Location: 24733 - 25872 (-)
Type: pfam
Location: 24733 - 25872 (-)
Gene ID: HRGMv2_2940_1_27
Type: TC
Location: 26149 - 26976 (-)
Type: TC
Location: 26149 - 26976 (-)
Gene ID: HRGMv2_2940_1_28
Type: pfam
Location: 26969 - 27202 (-)
Type: pfam
Location: 26969 - 27202 (-)
Gene ID: HRGMv2_2940_1_29
Type: TC
Location: 27217 - 29580 (-)
Type: TC
Location: 27217 - 29580 (-)
Gene ID: HRGMv2_2940_1_30
Type: pfam
Location: 29634 - 36617 (-)
Type: pfam
Location: 29634 - 36617 (-)
Gene ID: HRGMv2_2940_1_31
Type: pfam
Location: 36659 - 37045 (-)
Type: pfam
Location: 36659 - 37045 (-)
Gene ID: HRGMv2_2940_1_32
Type: TC
Location: 38057 - 40138 (-)
Type: TC
Location: 38057 - 40138 (-)
Gene ID: HRGMv2_2940_1_33
Type: pfam
Location: 40203 - 40913 (-)
Type: pfam
Location: 40203 - 40913 (-)
Gene ID: HRGMv2_2940_1_34
Type: pfam
Location: 40906 - 41181 (-)
Type: pfam
Location: 40906 - 41181 (-)
Gene ID: HRGMv2_2940_1_35
Type: TC
Location: 41191 - 43254 (-)
Type: TC
Location: 41191 - 43254 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-103
Species
CAG-103 sp004556965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.