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Cluster: HRGMv2_2939_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2939_3 HRGMv2_2939_3_44 43174 43863 + 1.C.82.1.1
pfam HRGMv2_2939_3 HRGMv2_2939_3_45 44138 44674 + Ribosomal_L10
pfam HRGMv2_2939_3 HRGMv2_2939_3_46 44709 45080 + Ribosomal_L12 | Ribosomal_L12_N
TC HRGMv2_2939_3 HRGMv2_2939_3_47 45178 46545 - 2.A.2.2.1
CAZyme HRGMv2_2939_3 HRGMv2_2939_3_48 46542 48812 - GH36
CAZyme HRGMv2_2939_3 HRGMv2_2939_3_49 48809 50095 - GH1
CAZyme HRGMv2_2939_3 HRGMv2_2939_3_50 50226 51878 + GH13_31
TC HRGMv2_2939_3 HRGMv2_2939_3_51 51962 53788 - 9.A.8.1.5
Gene ID: HRGMv2_2939_3_44
Type: TC
Location: 43174 - 43863 (+)
Gene ID: HRGMv2_2939_3_45
Type: pfam
Location: 44138 - 44674 (+)
Gene ID: HRGMv2_2939_3_46
Type: pfam
Location: 44709 - 45080 (+)
Gene ID: HRGMv2_2939_3_47
Type: TC
Location: 45178 - 46545 (-)
Gene ID: HRGMv2_2939_3_48
Type: CAZyme
Location: 46542 - 48812 (-)
Gene ID: HRGMv2_2939_3_49
Type: CAZyme
Location: 48809 - 50095 (-)
Gene ID: HRGMv2_2939_3_50
Type: CAZyme
Location: 50226 - 51878 (+)
Gene ID: HRGMv2_2939_3_51
Type: TC
Location: 51962 - 53788 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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