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Cluster: HRGMv2_2939_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2939_50 HRGMv2_2939_50_4 6159 8855 - GH38
TC HRGMv2_2939_50 HRGMv2_2939_50_5 8871 10529 - 9.B.33.1.1
TF HRGMv2_2939_50 HRGMv2_2939_50_6 10526 11248 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_2939_50 HRGMv2_2939_50_7 11272 12465 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2939_50 HRGMv2_2939_50_8 12476 15676 - GH2
TC HRGMv2_2939_50 HRGMv2_2939_50_9 15686 16573 - 3.A.1.1.9
TC HRGMv2_2939_50 HRGMv2_2939_50_10 16587 17516 - 3.A.1.1.9
TC HRGMv2_2939_50 HRGMv2_2939_50_11 17509 19008 - 3.A.1.1.9
Gene ID: HRGMv2_2939_50_4
Type: CAZyme
Location: 6159 - 8855 (-)
Gene ID: HRGMv2_2939_50_5
Type: TC
Location: 8871 - 10529 (-)
Gene ID: HRGMv2_2939_50_6
Type: TF
Location: 10526 - 11248 (-)
Gene ID: HRGMv2_2939_50_7
Type:
Location: 11272 - 12465 (-)
Gene ID: HRGMv2_2939_50_8
Type: CAZyme
Location: 12476 - 15676 (-)
Gene ID: HRGMv2_2939_50_9
Type: TC
Location: 15686 - 16573 (-)
Gene ID: HRGMv2_2939_50_10
Type: TC
Location: 16587 - 17516 (-)
Gene ID: HRGMv2_2939_50_11
Type: TC
Location: 17509 - 19008 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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