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Cluster: HRGMv2_2939_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2939_38 HRGMv2_2939_38_5 5448 7679 + GT4
NULL(UNKNOWN) HRGMv2_2939_38 HRGMv2_2939_38_6 7694 8065 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2939_38 HRGMv2_2939_38_7 8483 8776 + HTH_3
TC HRGMv2_2939_38 HRGMv2_2939_38_8 8835 9431 - 2.A.115.2.14
pfam HRGMv2_2939_38 HRGMv2_2939_38_9 9458 10732 - SDH_alpha
STP HRGMv2_2939_38 HRGMv2_2939_38_10 11077 11589 - NUDIX
TC HRGMv2_2939_38 HRGMv2_2939_38_11 11867 13786 - 3.A.1.135.5
TC HRGMv2_2939_38 HRGMv2_2939_38_12 13786 15540 - 3.A.1.135.5
TC HRGMv2_2939_38 HRGMv2_2939_38_13 15637 17922 - 3.A.9.1.2
Gene ID: HRGMv2_2939_38_5
Type: CAZyme
Location: 5448 - 7679 (+)
Gene ID: HRGMv2_2939_38_6
Type:
Location: 7694 - 8065 (+)
Gene ID: HRGMv2_2939_38_7
Type: TF
Location: 8483 - 8776 (+)
Gene ID: HRGMv2_2939_38_8
Type: TC
Location: 8835 - 9431 (-)
Gene ID: HRGMv2_2939_38_9
Type: pfam
Location: 9458 - 10732 (-)
Gene ID: HRGMv2_2939_38_10
Type: STP
Location: 11077 - 11589 (-)
Gene ID: HRGMv2_2939_38_11
Type: TC
Location: 11867 - 13786 (-)
Gene ID: HRGMv2_2939_38_12
Type: TC
Location: 13786 - 15540 (-)
Gene ID: HRGMv2_2939_38_13
Type: TC
Location: 15637 - 17922 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2939_38_10 vegan > omnivore 3.11045 0.02892

🧭 Explore Read Mapping of CGC

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