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Cluster: HRGMv2_2939_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2939_18 HRGMv2_2939_18_22 21849 22763 - 3.A.1.2.18
pfam HRGMv2_2939_18 HRGMv2_2939_18_23 22763 23857 - BPD_transp_2
TC HRGMv2_2939_18 HRGMv2_2939_18_24 23854 25371 - 3.A.1.2.12
pfam HRGMv2_2939_18 HRGMv2_2939_18_25 25512 26561 - Bmp
TF HRGMv2_2939_18 HRGMv2_2939_18_26 26605 28143 - GntR
CAZyme HRGMv2_2939_18 HRGMv2_2939_18_27 29384 30634 + GH29
peptidase HRGMv2_2939_18 HRGMv2_2939_18_28 30654 32006 + M17.UPW
TC HRGMv2_2939_18 HRGMv2_2939_18_29 32003 32767 + 9.B.158.1.3
Gene ID: HRGMv2_2939_18_22
Type: TC
Location: 21849 - 22763 (-)
Gene ID: HRGMv2_2939_18_23
Type: pfam
Location: 22763 - 23857 (-)
Gene ID: HRGMv2_2939_18_24
Type: TC
Location: 23854 - 25371 (-)
Gene ID: HRGMv2_2939_18_25
Type: pfam
Location: 25512 - 26561 (-)
Gene ID: HRGMv2_2939_18_26
Type: TF
Location: 26605 - 28143 (-)
Gene ID: HRGMv2_2939_18_27
Type: CAZyme
Location: 29384 - 30634 (+)
Gene ID: HRGMv2_2939_18_28
Type: peptidase
Location: 30654 - 32006 (+)
Gene ID: HRGMv2_2939_18_29
Type: TC
Location: 32003 - 32767 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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