Cluster: HRGMv2_2939_CGC16
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2939
- CGC Family ID: CGCFAM_01602
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2939_12 | HRGMv2_2939_12_9 | 7043 | 10879 | - | CBM35 | CBM35 | CBM61 | GH31_10 |
| CAZyme | HRGMv2_2939_12 | HRGMv2_2939_12_10 | 10905 | 14174 | - | CBM35 | GH31_7 |
| CAZyme | HRGMv2_2939_12 | HRGMv2_2939_12_11 | 14338 | 16725 | - | GH31_15 |
| CAZyme | HRGMv2_2939_12 | HRGMv2_2939_12_12 | 16722 | 19373 | - | GH31_7 |
| TC | HRGMv2_2939_12 | HRGMv2_2939_12_13 | 19375 | 20313 | - | 3.A.1.1.26 |
| TC | HRGMv2_2939_12 | HRGMv2_2939_12_14 | 20310 | 21194 | - | 3.A.1.1.48 |
| pfam | HRGMv2_2939_12 | HRGMv2_2939_12_15 | 21191 | 23422 | - | DUF5696 |
| pfam | HRGMv2_2939_12 | HRGMv2_2939_12_16 | 23409 | 25448 | - | NHL |
| TC | HRGMv2_2939_12 | HRGMv2_2939_12_17 | 25460 | 26374 | - | 3.A.1.1.39 |
| TC | HRGMv2_2939_12 | HRGMv2_2939_12_18 | 26379 | 27329 | - | 3.A.1.1.34 |
| STP | HRGMv2_2939_12 | HRGMv2_2939_12_19 | 27326 | 30214 | - | SBP_bac_1 |
| STP | HRGMv2_2939_12 | HRGMv2_2939_12_20 | 30284 | 31789 | - | SBP_bac_1 |
| CAZyme | HRGMv2_2939_12 | HRGMv2_2939_12_21 | 31895 | 34042 | - | GH65 |
| pfam | HRGMv2_2939_12 | HRGMv2_2939_12_22 | 34039 | 35847 | - | Glyco_hydro_125 |
| CAZyme | HRGMv2_2939_12 | HRGMv2_2939_12_23 | 35844 | 38432 | - | GH31_7 |
Gene ID: HRGMv2_2939_12_9
Type: CAZyme
Location: 7043 - 10879 (-)
Type: CAZyme
Location: 7043 - 10879 (-)
Gene ID: HRGMv2_2939_12_10
Type: CAZyme
Location: 10905 - 14174 (-)
Type: CAZyme
Location: 10905 - 14174 (-)
Gene ID: HRGMv2_2939_12_11
Type: CAZyme
Location: 14338 - 16725 (-)
Type: CAZyme
Location: 14338 - 16725 (-)
Gene ID: HRGMv2_2939_12_12
Type: CAZyme
Location: 16722 - 19373 (-)
Type: CAZyme
Location: 16722 - 19373 (-)
Gene ID: HRGMv2_2939_12_13
Type: TC
Location: 19375 - 20313 (-)
Type: TC
Location: 19375 - 20313 (-)
Gene ID: HRGMv2_2939_12_14
Type: TC
Location: 20310 - 21194 (-)
Type: TC
Location: 20310 - 21194 (-)
Gene ID: HRGMv2_2939_12_15
Type: pfam
Location: 21191 - 23422 (-)
Type: pfam
Location: 21191 - 23422 (-)
Gene ID: HRGMv2_2939_12_16
Type: pfam
Location: 23409 - 25448 (-)
Type: pfam
Location: 23409 - 25448 (-)
Gene ID: HRGMv2_2939_12_17
Type: TC
Location: 25460 - 26374 (-)
Type: TC
Location: 25460 - 26374 (-)
Gene ID: HRGMv2_2939_12_18
Type: TC
Location: 26379 - 27329 (-)
Type: TC
Location: 26379 - 27329 (-)
Gene ID: HRGMv2_2939_12_19
Type: STP
Location: 27326 - 30214 (-)
Type: STP
Location: 27326 - 30214 (-)
Gene ID: HRGMv2_2939_12_20
Type: STP
Location: 30284 - 31789 (-)
Type: STP
Location: 30284 - 31789 (-)
Gene ID: HRGMv2_2939_12_21
Type: CAZyme
Location: 31895 - 34042 (-)
Type: CAZyme
Location: 31895 - 34042 (-)
Gene ID: HRGMv2_2939_12_22
Type: pfam
Location: 34039 - 35847 (-)
Type: pfam
Location: 34039 - 35847 (-)
Gene ID: HRGMv2_2939_12_23
Type: CAZyme
Location: 35844 - 38432 (-)
Type: CAZyme
Location: 35844 - 38432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp934667815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.