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Cluster: HRGMv2_2935_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2935_28 HRGMv2_2935_28_2 633 1418 - 3.A.1.34.1
pfam HRGMv2_2935_28 HRGMv2_2935_28_3 1402 2400 - BPD_transp_2
TC HRGMv2_2935_28 HRGMv2_2935_28_4 2455 3492 - 3.A.1.34.1
pfam HRGMv2_2935_28 HRGMv2_2935_28_5 4154 5419 - Lipase_GDSL | Lipase_GDSL_2
TC HRGMv2_2935_28 HRGMv2_2935_28_6 5588 8536 - 3.A.1.122.2
TC HRGMv2_2935_28 HRGMv2_2935_28_7 8864 9652 + 3.A.1.3.2
TC HRGMv2_2935_28 HRGMv2_2935_28_8 9742 10443 + 3.A.1.3.20
TC HRGMv2_2935_28 HRGMv2_2935_28_9 10430 11152 + 3.A.1.3.25
CAZyme HRGMv2_2935_28 HRGMv2_2935_28_10 11369 12529 + GH27
Gene ID: HRGMv2_2935_28_2
Type: TC
Location: 633 - 1418 (-)
Gene ID: HRGMv2_2935_28_3
Type: pfam
Location: 1402 - 2400 (-)
Gene ID: HRGMv2_2935_28_4
Type: TC
Location: 2455 - 3492 (-)
Gene ID: HRGMv2_2935_28_5
Type: pfam
Location: 4154 - 5419 (-)
Gene ID: HRGMv2_2935_28_6
Type: TC
Location: 5588 - 8536 (-)
Gene ID: HRGMv2_2935_28_7
Type: TC
Location: 8864 - 9652 (+)
Gene ID: HRGMv2_2935_28_8
Type: TC
Location: 9742 - 10443 (+)
Gene ID: HRGMv2_2935_28_9
Type: TC
Location: 10430 - 11152 (+)
Gene ID: HRGMv2_2935_28_10
Type: CAZyme
Location: 11369 - 12529 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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