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Cluster: HRGMv2_2935_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_4 3493 5700 - GH78
pfam HRGMv2_2935_22 HRGMv2_2935_22_5 5712 6560 - AP_endonuc_2
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_6 6562 8745 - GH2
pfam HRGMv2_2935_22 HRGMv2_2935_22_7 8755 10266 - MFS_2
TF HRGMv2_2935_22 HRGMv2_2935_22_8 10471 11703 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_9 11817 13112 + GH1
TF HRGMv2_2935_22 HRGMv2_2935_22_10 13181 14032 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_11 14221 16071 + GH63
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_12 16280 17383 - GH5_4
NULL(UNKNOWN) HRGMv2_2935_22 HRGMv2_2935_22_13 17449 18132 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_14 18346 20109 - CBM91 | GH43_10
NULL(UNKNOWN) HRGMv2_2935_22 HRGMv2_2935_22_15 20195 20299 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_16 20409 22547 - CBM32 | GH29
NULL(UNKNOWN) HRGMv2_2935_22 HRGMv2_2935_22_17 22517 22951 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2935_22 HRGMv2_2935_22_18 23461 24435 + 8.A.5.1.3
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_19 24595 27612 - CBM32 | GH95
TF HRGMv2_2935_22 HRGMv2_2935_22_20 27880 28725 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_21 29078 30661 + GH30
pfam HRGMv2_2935_22 HRGMv2_2935_22_22 30805 32640 + Laminin_G_3 | DUF5110
NULL(UNKNOWN) HRGMv2_2935_22 HRGMv2_2935_22_23 32792 32950 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2935_22 HRGMv2_2935_22_24 33066 34868 - PL11
Gene ID: HRGMv2_2935_22_4
Type: CAZyme
Location: 3493 - 5700 (-)
Gene ID: HRGMv2_2935_22_5
Type: pfam
Location: 5712 - 6560 (-)
Gene ID: HRGMv2_2935_22_6
Type: CAZyme
Location: 6562 - 8745 (-)
Gene ID: HRGMv2_2935_22_7
Type: pfam
Location: 8755 - 10266 (-)
Gene ID: HRGMv2_2935_22_8
Type: TF
Location: 10471 - 11703 (+)
Gene ID: HRGMv2_2935_22_9
Type: CAZyme
Location: 11817 - 13112 (+)
Gene ID: HRGMv2_2935_22_10
Type: TF
Location: 13181 - 14032 (-)
Gene ID: HRGMv2_2935_22_11
Type: CAZyme
Location: 14221 - 16071 (+)
Gene ID: HRGMv2_2935_22_12
Type: CAZyme
Location: 16280 - 17383 (-)
Gene ID: HRGMv2_2935_22_13
Type:
Location: 17449 - 18132 (-)
Gene ID: HRGMv2_2935_22_14
Type: CAZyme
Location: 18346 - 20109 (-)
Gene ID: HRGMv2_2935_22_15
Type:
Location: 20195 - 20299 (-)
Gene ID: HRGMv2_2935_22_16
Type: CAZyme
Location: 20409 - 22547 (-)
Gene ID: HRGMv2_2935_22_17
Type:
Location: 22517 - 22951 (-)
Gene ID: HRGMv2_2935_22_18
Type: TC
Location: 23461 - 24435 (+)
Gene ID: HRGMv2_2935_22_19
Type: CAZyme
Location: 24595 - 27612 (-)
Gene ID: HRGMv2_2935_22_20
Type: TF
Location: 27880 - 28725 (-)
Gene ID: HRGMv2_2935_22_21
Type: CAZyme
Location: 29078 - 30661 (+)
Gene ID: HRGMv2_2935_22_22
Type: pfam
Location: 30805 - 32640 (+)
Gene ID: HRGMv2_2935_22_23
Type:
Location: 32792 - 32950 (-)
Gene ID: HRGMv2_2935_22_24
Type: CAZyme
Location: 33066 - 34868 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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