Cluster: HRGMv2_2935_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2935
- CGC Family ID: CGCFAM_02629
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2935_4 | HRGMv2_2935_4_16 | 15185 | 16921 | + | 3.A.1.135.5 |
| TC | HRGMv2_2935_4 | HRGMv2_2935_4_17 | 16918 | 18639 | + | 3.A.1.135.5 |
| pfam | HRGMv2_2935_4 | HRGMv2_2935_4_18 | 18712 | 19179 | + | DUF4830 |
| pfam | HRGMv2_2935_4 | HRGMv2_2935_4_19 | 19341 | 20063 | + | PseudoU_synth_2 | S4 |
| TC | HRGMv2_2935_4 | HRGMv2_2935_4_20 | 20217 | 21359 | + | 3.A.1.1.26 |
| CAZyme | HRGMv2_2935_4 | HRGMv2_2935_4_21 | 21475 | 22704 | + | CE17 |
Gene ID: HRGMv2_2935_4_16
Type: TC
Location: 15185 - 16921 (+)
Type: TC
Location: 15185 - 16921 (+)
Gene ID: HRGMv2_2935_4_17
Type: TC
Location: 16918 - 18639 (+)
Type: TC
Location: 16918 - 18639 (+)
Gene ID: HRGMv2_2935_4_18
Type: pfam
Location: 18712 - 19179 (+)
Type: pfam
Location: 18712 - 19179 (+)
Gene ID: HRGMv2_2935_4_19
Type: pfam
Location: 19341 - 20063 (+)
Type: pfam
Location: 19341 - 20063 (+)
Gene ID: HRGMv2_2935_4_20
Type: TC
Location: 20217 - 21359 (+)
Type: TC
Location: 20217 - 21359 (+)
Gene ID: HRGMv2_2935_4_21
Type: CAZyme
Location: 21475 - 22704 (+)
Type: CAZyme
Location: 21475 - 22704 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faeciplasma
Species
Faeciplasma sp900553675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2935_4_20 | vegan > omnivore | 1.15426 | 0.03783 |