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Cluster: HRGMv2_2932_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2932_5 HRGMv2_2932_5_170 187267 188955 - GH2
TC HRGMv2_2932_5 HRGMv2_2932_5_171 189231 190583 + 3.D.6.1.2
TC HRGMv2_2932_5 HRGMv2_2932_5_172 190580 191593 + 3.D.6.1.2
TC HRGMv2_2932_5 HRGMv2_2932_5_173 191590 192114 + 3.D.6.1.3
TC HRGMv2_2932_5 HRGMv2_2932_5_174 192127 192789 + 3.D.6.1.2
TC HRGMv2_2932_5 HRGMv2_2932_5_175 192789 193373 + 3.D.6.1.2
TC HRGMv2_2932_5 HRGMv2_2932_5_176 193390 194184 + 3.D.6.1.2
Gene ID: HRGMv2_2932_5_170
Type: CAZyme
Location: 187267 - 188955 (-)
Gene ID: HRGMv2_2932_5_171
Type: TC
Location: 189231 - 190583 (+)
Gene ID: HRGMv2_2932_5_172
Type: TC
Location: 190580 - 191593 (+)
Gene ID: HRGMv2_2932_5_173
Type: TC
Location: 191590 - 192114 (+)
Gene ID: HRGMv2_2932_5_174
Type: TC
Location: 192127 - 192789 (+)
Gene ID: HRGMv2_2932_5_175
Type: TC
Location: 192789 - 193373 (+)
Gene ID: HRGMv2_2932_5_176
Type: TC
Location: 193390 - 194184 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2932_5_173 vegetarian > vegan 1.77467 0.00363
HRGMv2_2932_5_175 vegetarian > vegan 1.00334 0.00363

🧭 Explore Read Mapping of CGC

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