Cluster: HRGMv2_2927_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2927
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2927_7 | HRGMv2_2927_7_44 | 54015 | 54875 | - | 3.A.1.1.39 |
| TC | HRGMv2_2927_7 | HRGMv2_2927_7_45 | 54887 | 55822 | - | 3.A.1.1.4 |
| STP | HRGMv2_2927_7 | HRGMv2_2927_7_46 | 55838 | 58762 | - | SBP_bac_1 |
| TC | HRGMv2_2927_7 | HRGMv2_2927_7_47 | 58891 | 59541 | - | 9.B.28.1.2 |
| CAZyme | HRGMv2_2927_7 | HRGMv2_2927_7_48 | 59568 | 60803 | - | GH10 |
| pfam | HRGMv2_2927_7 | HRGMv2_2927_7_49 | 60800 | 61693 | - | IU_nuc_hydro |
| STP | HRGMv2_2927_7 | HRGMv2_2927_7_50 | 61705 | 62604 | - | PfkB |
| CAZyme | HRGMv2_2927_7 | HRGMv2_2927_7_51 | 62819 | 64876 | + | GH13 |
| CAZyme | HRGMv2_2927_7 | HRGMv2_2927_7_52 | 64880 | 67024 | + | GH13 |
Gene ID: HRGMv2_2927_7_44
Type: TC
Location: 54015 - 54875 (-)
Type: TC
Location: 54015 - 54875 (-)
Gene ID: HRGMv2_2927_7_45
Type: TC
Location: 54887 - 55822 (-)
Type: TC
Location: 54887 - 55822 (-)
Gene ID: HRGMv2_2927_7_46
Type: STP
Location: 55838 - 58762 (-)
Type: STP
Location: 55838 - 58762 (-)
Gene ID: HRGMv2_2927_7_47
Type: TC
Location: 58891 - 59541 (-)
Type: TC
Location: 58891 - 59541 (-)
Gene ID: HRGMv2_2927_7_48
Type: CAZyme
Location: 59568 - 60803 (-)
Type: CAZyme
Location: 59568 - 60803 (-)
Gene ID: HRGMv2_2927_7_49
Type: pfam
Location: 60800 - 61693 (-)
Type: pfam
Location: 60800 - 61693 (-)
Gene ID: HRGMv2_2927_7_50
Type: STP
Location: 61705 - 62604 (-)
Type: STP
Location: 61705 - 62604 (-)
Gene ID: HRGMv2_2927_7_51
Type: CAZyme
Location: 62819 - 64876 (+)
Type: CAZyme
Location: 62819 - 64876 (+)
Gene ID: HRGMv2_2927_7_52
Type: CAZyme
Location: 64880 - 67024 (+)
Type: CAZyme
Location: 64880 - 67024 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900544405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2927_7_44 | vegan > omnivore | 3.77023 | 0.00435 |
| HRGMv2_2927_7_44 | vegetarian > omnivore | 3.83620 | 0.00063 |
| HRGMv2_2927_7_45 | vegan > omnivore | 4.41719 | 0.00435 |
| HRGMv2_2927_7_45 | vegetarian > omnivore | 3.91281 | 0.00063 |
| HRGMv2_2927_7_48 | vegan > omnivore | 4.46879 | 0.00435 |
| HRGMv2_2927_7_48 | vegetarian > omnivore | 3.67313 | 0.00063 |
| HRGMv2_2927_7_49 | vegan > omnivore | 2.89171 | 0.00435 |
| HRGMv2_2927_7_49 | vegetarian > omnivore | 2.78406 | 0.00063 |