Cluster: HRGMv2_2927_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2927
- CGC Family ID: CGCFAM_00126
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2927_2 | HRGMv2_2927_2_43 | 49087 | 51504 | + | GH3 |
| CAZyme | HRGMv2_2927_2 | HRGMv2_2927_2_44 | 51501 | 52511 | + | GT2 |
| pfam | HRGMv2_2927_2 | HRGMv2_2927_2_45 | 52511 | 53608 | + | Amino_oxidase | GLF | NAD_binding_8 |
| STP | HRGMv2_2927_2 | HRGMv2_2927_2_46 | 53744 | 54316 | + | TetR_N |
| TC | HRGMv2_2927_2 | HRGMv2_2927_2_47 | 54313 | 55221 | + | 3.A.1.105.3 |
Gene ID: HRGMv2_2927_2_43
Type: CAZyme
Location: 49087 - 51504 (+)
Type: CAZyme
Location: 49087 - 51504 (+)
Gene ID: HRGMv2_2927_2_44
Type: CAZyme
Location: 51501 - 52511 (+)
Type: CAZyme
Location: 51501 - 52511 (+)
Gene ID: HRGMv2_2927_2_45
Type: pfam
Location: 52511 - 53608 (+)
Type: pfam
Location: 52511 - 53608 (+)
Gene ID: HRGMv2_2927_2_46
Type: STP
Location: 53744 - 54316 (+)
Type: STP
Location: 53744 - 54316 (+)
Gene ID: HRGMv2_2927_2_47
Type: TC
Location: 54313 - 55221 (+)
Type: TC
Location: 54313 - 55221 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900544405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2927_2_44 | vegan > omnivore | 2.39909 | 0.00435 |
| HRGMv2_2927_2_44 | vegetarian > omnivore | 2.47837 | 0.00063 |
| HRGMv2_2927_2_45 | vegan > omnivore | 1.12854 | 0.00066 |
| HRGMv2_2927_2_46 | vegan > omnivore | 2.78058 | 0.00435 |
| HRGMv2_2927_2_46 | vegetarian > omnivore | 2.71914 | 0.00063 |