Cluster: HRGMv2_2927_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2927
- CGC Family ID: CGCFAM_00047
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2927_62 | HRGMv2_2927_62_1 | 242 | 1111 | - | 3.A.1.1.26 |
| TC | HRGMv2_2927_62 | HRGMv2_2927_62_2 | 1124 | 2071 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2927_62 | HRGMv2_2927_62_3 | 2204 | 3580 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2927_62 | HRGMv2_2927_62_4 | 3651 | 4661 | - | LacI |
| CAZyme | HRGMv2_2927_62 | HRGMv2_2927_62_5 | 5006 | 7420 | + | GH94 |
| CAZyme | HRGMv2_2927_62 | HRGMv2_2927_62_6 | 7417 | 8769 | + | GH1 |
Gene ID: HRGMv2_2927_62_1
Type: TC
Location: 242 - 1111 (-)
Type: TC
Location: 242 - 1111 (-)
Gene ID: HRGMv2_2927_62_2
Type: TC
Location: 1124 - 2071 (-)
Type: TC
Location: 1124 - 2071 (-)
Gene ID: HRGMv2_2927_62_3
Type:
Location: 2204 - 3580 (-)
Type:
Location: 2204 - 3580 (-)
Gene ID: HRGMv2_2927_62_4
Type: TF
Location: 3651 - 4661 (-)
Type: TF
Location: 3651 - 4661 (-)
Gene ID: HRGMv2_2927_62_5
Type: CAZyme
Location: 5006 - 7420 (+)
Type: CAZyme
Location: 5006 - 7420 (+)
Gene ID: HRGMv2_2927_62_6
Type: CAZyme
Location: 7417 - 8769 (+)
Type: CAZyme
Location: 7417 - 8769 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900544405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2927_62_6 | vegan > omnivore | 2.13126 | 0.00435 |
| HRGMv2_2927_62_6 | vegetarian > omnivore | 1.96748 | 0.00063 |