Cluster: HRGMv2_2927_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2927
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2927_49 | HRGMv2_2927_49_3 | 3309 | 4685 | - | 1.A.26.1.2 |
| CAZyme | HRGMv2_2927_49 | HRGMv2_2927_49_4 | 5095 | 6960 | + | GH13_9 |
| pfam | HRGMv2_2927_49 | HRGMv2_2927_49_5 | 7007 | 8197 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2927_49 | HRGMv2_2927_49_6 | 8212 | 9333 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2927_49 | HRGMv2_2927_49_7 | 9330 | 10775 | + | GT5 |
| CAZyme | HRGMv2_2927_49 | HRGMv2_2927_49_8 | 10847 | 12688 | + | GH13_39 |
Gene ID: HRGMv2_2927_49_3
Type: TC
Location: 3309 - 4685 (-)
Type: TC
Location: 3309 - 4685 (-)
Gene ID: HRGMv2_2927_49_4
Type: CAZyme
Location: 5095 - 6960 (+)
Type: CAZyme
Location: 5095 - 6960 (+)
Gene ID: HRGMv2_2927_49_5
Type: pfam
Location: 7007 - 8197 (+)
Type: pfam
Location: 7007 - 8197 (+)
Gene ID: HRGMv2_2927_49_6
Type: pfam
Location: 8212 - 9333 (+)
Type: pfam
Location: 8212 - 9333 (+)
Gene ID: HRGMv2_2927_49_7
Type: CAZyme
Location: 9330 - 10775 (+)
Type: CAZyme
Location: 9330 - 10775 (+)
Gene ID: HRGMv2_2927_49_8
Type: CAZyme
Location: 10847 - 12688 (+)
Type: CAZyme
Location: 10847 - 12688 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900544405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2927_49_6 | vegetarian > omnivore | 1.44286 | 0.00063 |
| HRGMv2_2927_49_8 | vegetarian > omnivore | 1.12780 | 0.00063 |