Cluster: HRGMv2_2927_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2927
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2927_17 | HRGMv2_2927_17_18 | 18041 | 19111 | - | GT4 |
| CAZyme | HRGMv2_2927_17 | HRGMv2_2927_17_19 | 19117 | 20211 | - | GT4 |
| pfam | HRGMv2_2927_17 | HRGMv2_2927_17_20 | 20216 | 21688 | - | Wzy_C |
| pfam | HRGMv2_2927_17 | HRGMv2_2927_17_21 | 21685 | 22707 | - | Sulfotransfer_3 |
| CAZyme | HRGMv2_2927_17 | HRGMv2_2927_17_22 | 22724 | 23710 | - | GT2 |
| CAZyme | HRGMv2_2927_17 | HRGMv2_2927_17_23 | 23748 | 24893 | - | GT4 |
| pfam | HRGMv2_2927_17 | HRGMv2_2927_17_24 | 24890 | 25768 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| TC | HRGMv2_2927_17 | HRGMv2_2927_17_25 | 25765 | 26424 | - | 9.B.18.1.2 |
| CAZyme | HRGMv2_2927_17 | HRGMv2_2927_17_26 | 26909 | 27718 | - | CE1 |
Gene ID: HRGMv2_2927_17_18
Type: CAZyme
Location: 18041 - 19111 (-)
Type: CAZyme
Location: 18041 - 19111 (-)
Gene ID: HRGMv2_2927_17_19
Type: CAZyme
Location: 19117 - 20211 (-)
Type: CAZyme
Location: 19117 - 20211 (-)
Gene ID: HRGMv2_2927_17_20
Type: pfam
Location: 20216 - 21688 (-)
Type: pfam
Location: 20216 - 21688 (-)
Gene ID: HRGMv2_2927_17_21
Type: pfam
Location: 21685 - 22707 (-)
Type: pfam
Location: 21685 - 22707 (-)
Gene ID: HRGMv2_2927_17_22
Type: CAZyme
Location: 22724 - 23710 (-)
Type: CAZyme
Location: 22724 - 23710 (-)
Gene ID: HRGMv2_2927_17_23
Type: CAZyme
Location: 23748 - 24893 (-)
Type: CAZyme
Location: 23748 - 24893 (-)
Gene ID: HRGMv2_2927_17_24
Type: pfam
Location: 24890 - 25768 (-)
Type: pfam
Location: 24890 - 25768 (-)
Gene ID: HRGMv2_2927_17_25
Type: TC
Location: 25765 - 26424 (-)
Type: TC
Location: 25765 - 26424 (-)
Gene ID: HRGMv2_2927_17_26
Type: CAZyme
Location: 26909 - 27718 (-)
Type: CAZyme
Location: 26909 - 27718 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900544405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2927_17_18 | vegan > omnivore | 1.93037 | 0.00435 |
| HRGMv2_2927_17_18 | vegetarian > omnivore | 1.93327 | 0.00063 |
| HRGMv2_2927_17_19 | vegan > omnivore | 2.58822 | 0.00435 |
| HRGMv2_2927_17_19 | vegetarian > omnivore | 2.25239 | 0.00063 |
| HRGMv2_2927_17_20 | vegan > omnivore | 2.11048 | 0.00435 |
| HRGMv2_2927_17_20 | vegetarian > omnivore | 1.70032 | 0.00063 |
| HRGMv2_2927_17_21 | vegan > omnivore | 3.31684 | 0.00435 |
| HRGMv2_2927_17_21 | vegetarian > omnivore | 3.01129 | 0.00063 |
| HRGMv2_2927_17_22 | vegan > omnivore | 3.87843 | 0.00435 |
| HRGMv2_2927_17_22 | vegetarian > omnivore | 3.55343 | 0.00063 |
| HRGMv2_2927_17_23 | vegan > omnivore | 1.63873 | 0.00435 |
| HRGMv2_2927_17_23 | vegetarian > omnivore | 1.64872 | 0.00063 |
| HRGMv2_2927_17_24 | vegan > omnivore | 1.34828 | 0.00435 |
| HRGMv2_2927_17_24 | vegetarian > omnivore | 1.39245 | 0.00063 |
| HRGMv2_2927_17_26 | vegan > omnivore | 4.58353 | 0.00435 |
| HRGMv2_2927_17_26 | vegetarian > omnivore | 4.36392 | 0.00063 |