dbCAN HGM

Cluster: HRGMv2_2927_CGC13

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_2927_14	HRGMv2_2927_14_1	2	2236	-	CBM67 \| GH78
TC	HRGMv2_2927_14	HRGMv2_2927_14_2	2237	3688	-	2.A.2.3.2
TF	HRGMv2_2927_14	HRGMv2_2927_14_3	3840	5027	+	HTH_AraC \| HTH_AraC
NULL(UNKNOWN)	HRGMv2_2927_14	HRGMv2_2927_14_4	5165	5413	-	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_2927_14	HRGMv2_2927_14_5	5695	6750	+	3.A.1.1.10
TC	HRGMv2_2927_14	HRGMv2_2927_14_6	6762	7724	+	3.A.1.1.34
TC	HRGMv2_2927_14	HRGMv2_2927_14_7	7737	8591	+	3.A.1.1.23

Gene ID: HRGMv2_2927_14_1
Type: CAZyme
Location: 2 - 2236 (-)

Gene ID: HRGMv2_2927_14_2
Type: TC
Location: 2237 - 3688 (-)

Gene ID: HRGMv2_2927_14_3
Type: TF
Location: 3840 - 5027 (+)

Gene ID: HRGMv2_2927_14_4
Type:
Location: 5165 - 5413 (-)

Gene ID: HRGMv2_2927_14_5
Type: TC
Location: 5695 - 6750 (+)

Gene ID: HRGMv2_2927_14_6
Type: TC
Location: 6762 - 7724 (+)

Gene ID: HRGMv2_2927_14_7
Type: TC
Location: 7737 - 8591 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2927_14_1	vegan > omnivore	2.39240	0.00435
HRGMv2_2927_14_1	vegetarian > omnivore	3.36938	0.00063
HRGMv2_2927_14_2	vegan > omnivore	2.93814	0.00435
HRGMv2_2927_14_2	vegetarian > omnivore	3.14354	0.00063
HRGMv2_2927_14_3	vegan > omnivore	1.78685	0.00435
HRGMv2_2927_14_3	vegetarian > omnivore	2.59841	0.00063
HRGMv2_2927_14_4	vegetarian > omnivore	1.41654	0.00063
HRGMv2_2927_14_6	vegan > omnivore	1.26743	0.00435
HRGMv2_2927_14_7	vegan > omnivore	2.53900	0.00435
HRGMv2_2927_14_7	vegetarian > omnivore	1.42899	0.00063

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2927_14_7	vegan > omnivore	3.26117	0.01882