Cluster: HRGMv2_2927_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2927
- CGC Family ID: CGCFAM_01341
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2927_12 | HRGMv2_2927_12_30 | 35761 | 37083 | + | GH4 |
| pfam | HRGMv2_2927_12 | HRGMv2_2927_12_31 | 37080 | 37817 | + | YdjC |
| TC | HRGMv2_2927_12 | HRGMv2_2927_12_32 | 37825 | 38934 | + | 3.A.1.1.22 |
| TC | HRGMv2_2927_12 | HRGMv2_2927_12_33 | 38900 | 40027 | + | 3.A.1.1.7 |
| TC | HRGMv2_2927_12 | HRGMv2_2927_12_34 | 40030 | 40956 | + | 3.A.1.1.11 |
Gene ID: HRGMv2_2927_12_30
Type: CAZyme
Location: 35761 - 37083 (+)
Type: CAZyme
Location: 35761 - 37083 (+)
Gene ID: HRGMv2_2927_12_31
Type: pfam
Location: 37080 - 37817 (+)
Type: pfam
Location: 37080 - 37817 (+)
Gene ID: HRGMv2_2927_12_32
Type: TC
Location: 37825 - 38934 (+)
Type: TC
Location: 37825 - 38934 (+)
Gene ID: HRGMv2_2927_12_33
Type: TC
Location: 38900 - 40027 (+)
Type: TC
Location: 38900 - 40027 (+)
Gene ID: HRGMv2_2927_12_34
Type: TC
Location: 40030 - 40956 (+)
Type: TC
Location: 40030 - 40956 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900544405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2927_12_30 | vegetarian > vegan | 1.42638 | 0.00701 |
| HRGMv2_2927_12_33 | vegetarian > vegan | 1.58242 | 0.00701 |
| HRGMv2_2927_12_34 | vegetarian > vegan | 1.32408 | 0.00701 |