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Cluster: HRGMv2_2927_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2927_8 HRGMv2_2927_8_28 32216 34549 + GH2
TC HRGMv2_2927_8 HRGMv2_2927_8_29 34550 36247 + 2.A.2.3.3
CAZyme HRGMv2_2927_8 HRGMv2_2927_8_30 36261 38768 + CBM67 | GH78
CAZyme HRGMv2_2927_8 HRGMv2_2927_8_31 38773 41115 + GH3
CAZyme HRGMv2_2927_8 HRGMv2_2927_8_32 41112 42587 + GH43_35
CAZyme HRGMv2_2927_8 HRGMv2_2927_8_33 42577 43893 + GH1
CAZyme HRGMv2_2927_8 HRGMv2_2927_8_34 43899 45440 + GH39
Gene ID: HRGMv2_2927_8_28
Type: CAZyme
Location: 32216 - 34549 (+)
Gene ID: HRGMv2_2927_8_29
Type: TC
Location: 34550 - 36247 (+)
Gene ID: HRGMv2_2927_8_30
Type: CAZyme
Location: 36261 - 38768 (+)
Gene ID: HRGMv2_2927_8_31
Type: CAZyme
Location: 38773 - 41115 (+)
Gene ID: HRGMv2_2927_8_32
Type: CAZyme
Location: 41112 - 42587 (+)
Gene ID: HRGMv2_2927_8_33
Type: CAZyme
Location: 42577 - 43893 (+)
Gene ID: HRGMv2_2927_8_34
Type: CAZyme
Location: 43899 - 45440 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2927_8_30 vegetarian > vegan 4.32414 0.00701
HRGMv2_2927_8_33 vegetarian > vegan 3.67381 0.00701
HRGMv2_2927_8_34 vegetarian > vegan 6.47355 0.00701

🧭 Explore Read Mapping of CGC

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