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Cluster: HRGMv2_2921_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2921_21 HRGMv2_2921_21_25 20503 21267 - 3.A.1.3.24
TC HRGMv2_2921_21 HRGMv2_2921_21_26 21280 21921 - 3.A.1.3.5
TC HRGMv2_2921_21 HRGMv2_2921_21_27 21962 22870 - 3.A.1.3.14
TC HRGMv2_2921_21 HRGMv2_2921_21_28 23043 23780 - 3.A.1.103.1
TC HRGMv2_2921_21 HRGMv2_2921_21_29 23793 24560 - 3.A.1.103.6
CAZyme HRGMv2_2921_21 HRGMv2_2921_21_30 24579 26537 - GT8 | GT8
CAZyme HRGMv2_2921_21 HRGMv2_2921_21_31 26559 27938 - GT4
TF HRGMv2_2921_21 HRGMv2_2921_21_32 28204 28482 + HTH_psq
TC HRGMv2_2921_21 HRGMv2_2921_21_33 28625 29422 + 2.A.5.5.2
pfam HRGMv2_2921_21 HRGMv2_2921_21_34 29475 30683 - EpsG
pfam HRGMv2_2921_21 HRGMv2_2921_21_35 30744 31922 - EpsG
TC HRGMv2_2921_21 HRGMv2_2921_21_36 32051 33445 - 9.B.18.1.1
Gene ID: HRGMv2_2921_21_25
Type: TC
Location: 20503 - 21267 (-)
Gene ID: HRGMv2_2921_21_26
Type: TC
Location: 21280 - 21921 (-)
Gene ID: HRGMv2_2921_21_27
Type: TC
Location: 21962 - 22870 (-)
Gene ID: HRGMv2_2921_21_28
Type: TC
Location: 23043 - 23780 (-)
Gene ID: HRGMv2_2921_21_29
Type: TC
Location: 23793 - 24560 (-)
Gene ID: HRGMv2_2921_21_30
Type: CAZyme
Location: 24579 - 26537 (-)
Gene ID: HRGMv2_2921_21_31
Type: CAZyme
Location: 26559 - 27938 (-)
Gene ID: HRGMv2_2921_21_32
Type: TF
Location: 28204 - 28482 (+)
Gene ID: HRGMv2_2921_21_33
Type: TC
Location: 28625 - 29422 (+)
Gene ID: HRGMv2_2921_21_34
Type: pfam
Location: 29475 - 30683 (-)
Gene ID: HRGMv2_2921_21_35
Type: pfam
Location: 30744 - 31922 (-)
Gene ID: HRGMv2_2921_21_36
Type: TC
Location: 32051 - 33445 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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