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Cluster: HRGMv2_2920_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2920_3 HRGMv2_2920_3_27 27885 30374 - 9.A.8.1.6
STP HRGMv2_2920_3 HRGMv2_2920_3_28 30437 30658 - FeoA
STP HRGMv2_2920_3 HRGMv2_2920_3_29 30692 30904 - FeoA
TC HRGMv2_2920_3 HRGMv2_2920_3_30 31159 32790 - 2.A.66.2.14
STP HRGMv2_2920_3 HRGMv2_2920_3_31 32879 33952 - HhH-GPD
pfam HRGMv2_2920_3 HRGMv2_2920_3_32 33966 34541 - Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8
TC HRGMv2_2920_3 HRGMv2_2920_3_33 34556 35215 - 5.A.1.2.7
pfam HRGMv2_2920_3 HRGMv2_2920_3_34 35367 36197 - AP_endonuc_2
CAZyme HRGMv2_2920_3 HRGMv2_2920_3_35 36220 37419 - GH109
TF HRGMv2_2920_3 HRGMv2_2920_3_36 37550 38368 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2920_3 HRGMv2_2920_3_37 38478 39572 + GH179
Gene ID: HRGMv2_2920_3_27
Type: TC
Location: 27885 - 30374 (-)
Gene ID: HRGMv2_2920_3_28
Type: STP
Location: 30437 - 30658 (-)
Gene ID: HRGMv2_2920_3_29
Type: STP
Location: 30692 - 30904 (-)
Gene ID: HRGMv2_2920_3_30
Type: TC
Location: 31159 - 32790 (-)
Gene ID: HRGMv2_2920_3_31
Type: STP
Location: 32879 - 33952 (-)
Gene ID: HRGMv2_2920_3_32
Type: pfam
Location: 33966 - 34541 (-)
Gene ID: HRGMv2_2920_3_33
Type: TC
Location: 34556 - 35215 (-)
Gene ID: HRGMv2_2920_3_34
Type: pfam
Location: 35367 - 36197 (-)
Gene ID: HRGMv2_2920_3_35
Type: CAZyme
Location: 36220 - 37419 (-)
Gene ID: HRGMv2_2920_3_36
Type: TF
Location: 37550 - 38368 (+)
Gene ID: HRGMv2_2920_3_37
Type: CAZyme
Location: 38478 - 39572 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2920_3_29 vegetarian > vegan 1.08232 0.00701

🧭 Explore Read Mapping of CGC

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