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Cluster: HRGMv2_2920_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2920_20 HRGMv2_2920_20_10 8379 9194 - 3.A.1.148.1
NULL(UNKNOWN) HRGMv2_2920_20 HRGMv2_2920_20_11 9191 10954 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2920_20 HRGMv2_2920_20_12 11103 11627 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2920_20 HRGMv2_2920_20_13 11707 12561 - 3.A.1.1.29
TC HRGMv2_2920_20 HRGMv2_2920_20_14 12660 13613 - 3.A.1.1.29
TF HRGMv2_2920_20 HRGMv2_2920_20_15 14029 16380 + HTH_AraC
pfam HRGMv2_2920_20 HRGMv2_2920_20_16 16566 17363 - AP_endonuc_2
CAZyme HRGMv2_2920_20 HRGMv2_2920_20_17 17379 18452 - GH179
CAZyme HRGMv2_2920_20 HRGMv2_2920_20_18 18749 21007 + GH3
TC HRGMv2_2920_20 HRGMv2_2920_20_19 21399 22577 + 3.A.1.14.5
TC HRGMv2_2920_20 HRGMv2_2920_20_20 22574 23329 + 3.A.1.14.13
Gene ID: HRGMv2_2920_20_10
Type: TC
Location: 8379 - 9194 (-)
Gene ID: HRGMv2_2920_20_11
Type:
Location: 9191 - 10954 (-)
Gene ID: HRGMv2_2920_20_12
Type:
Location: 11103 - 11627 (-)
Gene ID: HRGMv2_2920_20_13
Type: TC
Location: 11707 - 12561 (-)
Gene ID: HRGMv2_2920_20_14
Type: TC
Location: 12660 - 13613 (-)
Gene ID: HRGMv2_2920_20_15
Type: TF
Location: 14029 - 16380 (+)
Gene ID: HRGMv2_2920_20_16
Type: pfam
Location: 16566 - 17363 (-)
Gene ID: HRGMv2_2920_20_17
Type: CAZyme
Location: 17379 - 18452 (-)
Gene ID: HRGMv2_2920_20_18
Type: CAZyme
Location: 18749 - 21007 (+)
Gene ID: HRGMv2_2920_20_19
Type: TC
Location: 21399 - 22577 (+)
Gene ID: HRGMv2_2920_20_20
Type: TC
Location: 22574 - 23329 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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