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Cluster: HRGMv2_2920_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2920_13 HRGMv2_2920_13_43 39665 40333 - 2.A.38.4.4
TC HRGMv2_2920_13 HRGMv2_2920_13_44 40370 41677 - 2.A.38.4.5
pfam HRGMv2_2920_13 HRGMv2_2920_13_45 41753 42376 - PhoU_div
TC HRGMv2_2920_13 HRGMv2_2920_13_46 42468 43514 - 2.A.20.1.5
TF HRGMv2_2920_13 HRGMv2_2920_13_47 43935 44399 + 0040517
pfam HRGMv2_2920_13 HRGMv2_2920_13_48 44402 45796 + MatE | MatE
TC HRGMv2_2920_13 HRGMv2_2920_13_49 46230 48308 + 3.A.10.1.5
TC HRGMv2_2920_13 HRGMv2_2920_13_50 48440 49816 + 2.A.40.7.2
TC HRGMv2_2920_13 HRGMv2_2920_13_51 49953 51335 + 9.A.40.2.1
pfam HRGMv2_2920_13 HRGMv2_2920_13_52 52120 52869 + MatE
CAZyme HRGMv2_2920_13 HRGMv2_2920_13_53 52895 53977 - GH172
Gene ID: HRGMv2_2920_13_43
Type: TC
Location: 39665 - 40333 (-)
Gene ID: HRGMv2_2920_13_44
Type: TC
Location: 40370 - 41677 (-)
Gene ID: HRGMv2_2920_13_45
Type: pfam
Location: 41753 - 42376 (-)
Gene ID: HRGMv2_2920_13_46
Type: TC
Location: 42468 - 43514 (-)
Gene ID: HRGMv2_2920_13_47
Type: TF
Location: 43935 - 44399 (+)
Gene ID: HRGMv2_2920_13_48
Type: pfam
Location: 44402 - 45796 (+)
Gene ID: HRGMv2_2920_13_49
Type: TC
Location: 46230 - 48308 (+)
Gene ID: HRGMv2_2920_13_50
Type: TC
Location: 48440 - 49816 (+)
Gene ID: HRGMv2_2920_13_51
Type: TC
Location: 49953 - 51335 (+)
Gene ID: HRGMv2_2920_13_52
Type: pfam
Location: 52120 - 52869 (+)
Gene ID: HRGMv2_2920_13_53
Type: CAZyme
Location: 52895 - 53977 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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