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Cluster: HRGMv2_2920_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2920_11 HRGMv2_2920_11_20 22198 23088 + 3.A.1.1.9
TC HRGMv2_2920_11 HRGMv2_2920_11_21 23103 23987 + 3.A.1.1.9
pfam HRGMv2_2920_11 HRGMv2_2920_11_22 24154 25173 + URO-D
pfam HRGMv2_2920_11 HRGMv2_2920_11_23 25198 26247 + URO-D
TC HRGMv2_2920_11 HRGMv2_2920_11_24 26466 30572 + 9.B.34.1.2
STP HRGMv2_2920_11 HRGMv2_2920_11_25 30565 33126 + CheB_methylest | CheR | CheR_N
TC HRGMv2_2920_11 HRGMv2_2920_11_26 33197 34597 - 9.B.34.1.1
CAZyme HRGMv2_2920_11 HRGMv2_2920_11_27 34881 36254 + GH29
Gene ID: HRGMv2_2920_11_20
Type: TC
Location: 22198 - 23088 (+)
Gene ID: HRGMv2_2920_11_21
Type: TC
Location: 23103 - 23987 (+)
Gene ID: HRGMv2_2920_11_22
Type: pfam
Location: 24154 - 25173 (+)
Gene ID: HRGMv2_2920_11_23
Type: pfam
Location: 25198 - 26247 (+)
Gene ID: HRGMv2_2920_11_24
Type: TC
Location: 26466 - 30572 (+)
Gene ID: HRGMv2_2920_11_25
Type: STP
Location: 30565 - 33126 (+)
Gene ID: HRGMv2_2920_11_26
Type: TC
Location: 33197 - 34597 (-)
Gene ID: HRGMv2_2920_11_27
Type: CAZyme
Location: 34881 - 36254 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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