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Cluster: HRGMv2_2919_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2919_17 HRGMv2_2919_17_3 2361 3407 + 9.B.18.2.1
pfam HRGMv2_2919_17 HRGMv2_2919_17_4 3404 4543 + Cupin_1 | Epimerase | Polysacc_synt_C
pfam HRGMv2_2919_17 HRGMv2_2919_17_5 4547 5674 + Epimerase_2
CAZyme HRGMv2_2919_17 HRGMv2_2919_17_6 5686 6480 + GT2
pfam HRGMv2_2919_17 HRGMv2_2919_17_7 6477 7766 + Glyco_trans_1_2
pfam HRGMv2_2919_17 HRGMv2_2919_17_8 7763 8557 + LicD
CAZyme HRGMv2_2919_17 HRGMv2_2919_17_9 8554 9768 + GT4
NULL(UNKNOWN) HRGMv2_2919_17 HRGMv2_2919_17_10 9797 11062 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2919_17 HRGMv2_2919_17_11 11073 12113 + GT4
pfam HRGMv2_2919_17 HRGMv2_2919_17_12 12131 13405 + Polysacc_synt | Polysacc_synt_3
pfam HRGMv2_2919_17 HRGMv2_2919_17_13 13410 14105 + Wzz
TC HRGMv2_2919_17 HRGMv2_2919_17_14 14074 14856 - 2.A.5.5.2
TC HRGMv2_2919_17 HRGMv2_2919_17_15 15751 16641 + 3.A.1.32.2
pfam HRGMv2_2919_17 HRGMv2_2919_17_16 16655 17200 + DUF2284
TC HRGMv2_2919_17 HRGMv2_2919_17_17 17218 19851 + 3.A.1.32.2
Gene ID: HRGMv2_2919_17_3
Type: TC
Location: 2361 - 3407 (+)
Gene ID: HRGMv2_2919_17_4
Type: pfam
Location: 3404 - 4543 (+)
Gene ID: HRGMv2_2919_17_5
Type: pfam
Location: 4547 - 5674 (+)
Gene ID: HRGMv2_2919_17_6
Type: CAZyme
Location: 5686 - 6480 (+)
Gene ID: HRGMv2_2919_17_7
Type: pfam
Location: 6477 - 7766 (+)
Gene ID: HRGMv2_2919_17_8
Type: pfam
Location: 7763 - 8557 (+)
Gene ID: HRGMv2_2919_17_9
Type: CAZyme
Location: 8554 - 9768 (+)
Gene ID: HRGMv2_2919_17_10
Type:
Location: 9797 - 11062 (+)
Gene ID: HRGMv2_2919_17_11
Type: CAZyme
Location: 11073 - 12113 (+)
Gene ID: HRGMv2_2919_17_12
Type: pfam
Location: 12131 - 13405 (+)
Gene ID: HRGMv2_2919_17_13
Type: pfam
Location: 13410 - 14105 (+)
Gene ID: HRGMv2_2919_17_14
Type: TC
Location: 14074 - 14856 (-)
Gene ID: HRGMv2_2919_17_15
Type: TC
Location: 15751 - 16641 (+)
Gene ID: HRGMv2_2919_17_16
Type: pfam
Location: 16655 - 17200 (+)
Gene ID: HRGMv2_2919_17_17
Type: TC
Location: 17218 - 19851 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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