Cluster: HRGMv2_2915_CGC6

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2915_24	HRGMv2_2915_24_7	6832	8160	-	2.A.66.2.9
CAZyme	HRGMv2_2915_24	HRGMv2_2915_24_8	8147	9367	-	GT4
NULL(UNKNOWN)	HRGMv2_2915_24	HRGMv2_2915_24_9	9379	10692	-	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_2915_24	HRGMv2_2915_24_10	11124	11954	+	3.A.1.3.10
TC	HRGMv2_2915_24	HRGMv2_2915_24_11	12043	12744	+	3.A.1.3.15
TC	HRGMv2_2915_24	HRGMv2_2915_24_12	12731	13624	+	3.A.1.3.24
TC	HRGMv2_2915_24	HRGMv2_2915_24_13	14412	16382	-	3.A.1.135.6
TC	HRGMv2_2915_24	HRGMv2_2915_24_14	16366	18141	-	3.A.1.135.5
TF	HRGMv2_2915_24	HRGMv2_2915_24_15	18145	18633	-	MarR
pfam	HRGMv2_2915_24	HRGMv2_2915_24_16	19504	20094	+	Peptidase_M50
TC	HRGMv2_2915_24	HRGMv2_2915_24_17	20362	21489	+	3.A.1.11.8
TC	HRGMv2_2915_24	HRGMv2_2915_24_18	21486	22307	+	3.A.1.11.1
TC	HRGMv2_2915_24	HRGMv2_2915_24_19	22304	23122	+	3.A.1.11.2
TC	HRGMv2_2915_24	HRGMv2_2915_24_20	23119	24372	+	3.A.1.11.1

Gene ID: HRGMv2_2915_24_7
Type: TC
Location: 6832 - 8160 (-)

Gene ID: HRGMv2_2915_24_8
Type: CAZyme
Location: 8147 - 9367 (-)

Gene ID: HRGMv2_2915_24_9
Type:
Location: 9379 - 10692 (-)

Gene ID: HRGMv2_2915_24_10
Type: TC
Location: 11124 - 11954 (+)

Gene ID: HRGMv2_2915_24_11
Type: TC
Location: 12043 - 12744 (+)

Gene ID: HRGMv2_2915_24_12
Type: TC
Location: 12731 - 13624 (+)

Gene ID: HRGMv2_2915_24_13
Type: TC
Location: 14412 - 16382 (-)

Gene ID: HRGMv2_2915_24_14
Type: TC
Location: 16366 - 18141 (-)

Gene ID: HRGMv2_2915_24_15
Type: TF
Location: 18145 - 18633 (-)

Gene ID: HRGMv2_2915_24_16
Type: pfam
Location: 19504 - 20094 (+)

Gene ID: HRGMv2_2915_24_17
Type: TC
Location: 20362 - 21489 (+)

Gene ID: HRGMv2_2915_24_18
Type: TC
Location: 21486 - 22307 (+)

Gene ID: HRGMv2_2915_24_19
Type: TC
Location: 22304 - 23122 (+)

Gene ID: HRGMv2_2915_24_20
Type: TC
Location: 23119 - 24372 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2915_24_8	vegan > omnivore	1.67695	0.00937
HRGMv2_2915_24_9	vegan > omnivore	1.55665	0.00937
HRGMv2_2915_24_10	vegan > omnivore	1.58800	0.00937
HRGMv2_2915_24_11	vegan > omnivore	1.12203	0.00937
HRGMv2_2915_24_15	vegan > omnivore	3.11672	0.00937
HRGMv2_2915_24_16	vegan > omnivore	1.81025	0.00937
HRGMv2_2915_24_18	vegan > omnivore	1.32539	0.00937
HRGMv2_2915_24_19	vegan > omnivore	2.45921	0.00937
HRGMv2_2915_24_20	vegan > omnivore	1.23407	0.00937