Cluster: HRGMv2_2915_CGC5
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2915
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2915_20 | HRGMv2_2915_20_7 | 9493 | 12039 | - | GT35 |
| CAZyme | HRGMv2_2915_20 | HRGMv2_2915_20_8 | 12065 | 13684 | - | GT5 |
| pfam | HRGMv2_2915_20 | HRGMv2_2915_20_9 | 13688 | 14821 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2915_20 | HRGMv2_2915_20_10 | 14836 | 16020 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2915_20 | HRGMv2_2915_20_11 | 16176 | 18134 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_2915_20 | HRGMv2_2915_20_12 | 18538 | 20781 | + | CBM67 | GH78 |
| pfam | HRGMv2_2915_20 | HRGMv2_2915_20_13 | 20986 | 21756 | - | TauE |
| TF | HRGMv2_2915_20 | HRGMv2_2915_20_14 | 21747 | 22196 | - | MarR |
| TC | HRGMv2_2915_20 | HRGMv2_2915_20_15 | 22367 | 23485 | + | 9.B.157.1.1 |
Gene ID: HRGMv2_2915_20_7
Type: CAZyme
Location: 9493 - 12039 (-)
Type: CAZyme
Location: 9493 - 12039 (-)
Gene ID: HRGMv2_2915_20_8
Type: CAZyme
Location: 12065 - 13684 (-)
Type: CAZyme
Location: 12065 - 13684 (-)
Gene ID: HRGMv2_2915_20_9
Type: pfam
Location: 13688 - 14821 (-)
Type: pfam
Location: 13688 - 14821 (-)
Gene ID: HRGMv2_2915_20_10
Type: pfam
Location: 14836 - 16020 (-)
Type: pfam
Location: 14836 - 16020 (-)
Gene ID: HRGMv2_2915_20_11
Type: CAZyme
Location: 16176 - 18134 (-)
Type: CAZyme
Location: 16176 - 18134 (-)
Gene ID: HRGMv2_2915_20_12
Type: CAZyme
Location: 18538 - 20781 (+)
Type: CAZyme
Location: 18538 - 20781 (+)
Gene ID: HRGMv2_2915_20_13
Type: pfam
Location: 20986 - 21756 (-)
Type: pfam
Location: 20986 - 21756 (-)
Gene ID: HRGMv2_2915_20_14
Type: TF
Location: 21747 - 22196 (-)
Type: TF
Location: 21747 - 22196 (-)
Gene ID: HRGMv2_2915_20_15
Type: TC
Location: 22367 - 23485 (+)
Type: TC
Location: 22367 - 23485 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1865
Species
UMGS1865 sp900547725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2915_20_8 | vegan > omnivore | 1.11009 | 0.00937 |
| HRGMv2_2915_20_9 | vegan > omnivore | 1.05030 | 0.00937 |
| HRGMv2_2915_20_12 | vegan > omnivore | 1.74860 | 0.00937 |
| HRGMv2_2915_20_14 | vegan > omnivore | 1.64174 | 0.00937 |