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Cluster: HRGMv2_2910_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2910_9 HRGMv2_2910_9_17 21678 24359 - GH2
TF HRGMv2_2910_9 HRGMv2_2910_9_18 24489 25415 - HTH_AraC | HTH_AraC
STP HRGMv2_2910_9 HRGMv2_2910_9_19 25507 28773 + TPR_2
TC HRGMv2_2910_9 HRGMv2_2910_9_20 28975 30087 + 3.A.1.1.38
TC HRGMv2_2910_9 HRGMv2_2910_9_21 30112 31002 + 3.A.1.1.23
TC HRGMv2_2910_9 HRGMv2_2910_9_22 31017 31892 + 3.A.1.1.20
STP HRGMv2_2910_9 HRGMv2_2910_9_23 31889 33490 + SBP_bac_1
NULL(UNKNOWN) HRGMv2_2910_9 HRGMv2_2910_9_24 33677 34540 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2910_9 HRGMv2_2910_9_25 34653 36152 - GH39
CAZyme HRGMv2_2910_9 HRGMv2_2910_9_26 36176 37324 - GH8
Gene ID: HRGMv2_2910_9_17
Type: CAZyme
Location: 21678 - 24359 (-)
Gene ID: HRGMv2_2910_9_18
Type: TF
Location: 24489 - 25415 (-)
Gene ID: HRGMv2_2910_9_19
Type: STP
Location: 25507 - 28773 (+)
Gene ID: HRGMv2_2910_9_20
Type: TC
Location: 28975 - 30087 (+)
Gene ID: HRGMv2_2910_9_21
Type: TC
Location: 30112 - 31002 (+)
Gene ID: HRGMv2_2910_9_22
Type: TC
Location: 31017 - 31892 (+)
Gene ID: HRGMv2_2910_9_23
Type: STP
Location: 31889 - 33490 (+)
Gene ID: HRGMv2_2910_9_24
Type:
Location: 33677 - 34540 (+)
Gene ID: HRGMv2_2910_9_25
Type: CAZyme
Location: 34653 - 36152 (-)
Gene ID: HRGMv2_2910_9_26
Type: CAZyme
Location: 36176 - 37324 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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