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Cluster: HRGMv2_2908_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2908_2 HRGMv2_2908_2_54 40267 41367 - GH32
TC HRGMv2_2908_2 HRGMv2_2908_2_55 41484 42053 - 3.A.1.3.25
pfam HRGMv2_2908_2 HRGMv2_2908_2_56 42068 42853 - BPD_transp_1
STP HRGMv2_2908_2 HRGMv2_2908_2_57 42828 43946 - LysR_substrate
TC HRGMv2_2908_2 HRGMv2_2908_2_58 44122 44607 - 2.A.2.2.2
STP HRGMv2_2908_2 HRGMv2_2908_2_59 44818 45351 + Sigma70_r2 | Sigma70_r4_2
NULL(UNKNOWN) HRGMv2_2908_2 HRGMv2_2908_2_60 45336 46529 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2908_2 HRGMv2_2908_2_61 46644 47207 + 2.A.51.1.6
TC HRGMv2_2908_2 HRGMv2_2908_2_62 47180 47761 + 2.A.51.1.6
pfam HRGMv2_2908_2 HRGMv2_2908_2_63 47804 49273 - PPK2 | PPK2
TC HRGMv2_2908_2 HRGMv2_2908_2_64 49503 50873 + 2.A.66.1.32
pfam HRGMv2_2908_2 HRGMv2_2908_2_65 51003 51788 - F420_oxidored | P5CR_dimer
TC HRGMv2_2908_2 HRGMv2_2908_2_66 51845 52639 - 3.A.1.14.8
TC HRGMv2_2908_2 HRGMv2_2908_2_67 52632 53654 - 3.A.1.14.5
Gene ID: HRGMv2_2908_2_54
Type: CAZyme
Location: 40267 - 41367 (-)
Gene ID: HRGMv2_2908_2_55
Type: TC
Location: 41484 - 42053 (-)
Gene ID: HRGMv2_2908_2_56
Type: pfam
Location: 42068 - 42853 (-)
Gene ID: HRGMv2_2908_2_57
Type: STP
Location: 42828 - 43946 (-)
Gene ID: HRGMv2_2908_2_58
Type: TC
Location: 44122 - 44607 (-)
Gene ID: HRGMv2_2908_2_59
Type: STP
Location: 44818 - 45351 (+)
Gene ID: HRGMv2_2908_2_60
Type:
Location: 45336 - 46529 (+)
Gene ID: HRGMv2_2908_2_61
Type: TC
Location: 46644 - 47207 (+)
Gene ID: HRGMv2_2908_2_62
Type: TC
Location: 47180 - 47761 (+)
Gene ID: HRGMv2_2908_2_63
Type: pfam
Location: 47804 - 49273 (-)
Gene ID: HRGMv2_2908_2_64
Type: TC
Location: 49503 - 50873 (+)
Gene ID: HRGMv2_2908_2_65
Type: pfam
Location: 51003 - 51788 (-)
Gene ID: HRGMv2_2908_2_66
Type: TC
Location: 51845 - 52639 (-)
Gene ID: HRGMv2_2908_2_67
Type: TC
Location: 52632 - 53654 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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