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Cluster: HRGMv2_2908_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2908_21 HRGMv2_2908_21_1 571 2244 + 3.A.1.1.10
TC HRGMv2_2908_21 HRGMv2_2908_21_2 2332 3231 + 3.A.1.1.10
TC HRGMv2_2908_21 HRGMv2_2908_21_3 3253 4140 + 3.A.1.1.10
pfam HRGMv2_2908_21 HRGMv2_2908_21_4 4243 5214 + AP_endonuc_2
pfam HRGMv2_2908_21 HRGMv2_2908_21_5 5286 6113 + AP_endonuc_2
CAZyme HRGMv2_2908_21 HRGMv2_2908_21_6 6130 7668 + GH43_28
CAZyme HRGMv2_2908_21 HRGMv2_2908_21_7 7693 8871 + GH179
CAZyme HRGMv2_2908_21 HRGMv2_2908_21_8 8987 10024 + CE15
Gene ID: HRGMv2_2908_21_1
Type: TC
Location: 571 - 2244 (+)
Gene ID: HRGMv2_2908_21_2
Type: TC
Location: 2332 - 3231 (+)
Gene ID: HRGMv2_2908_21_3
Type: TC
Location: 3253 - 4140 (+)
Gene ID: HRGMv2_2908_21_4
Type: pfam
Location: 4243 - 5214 (+)
Gene ID: HRGMv2_2908_21_5
Type: pfam
Location: 5286 - 6113 (+)
Gene ID: HRGMv2_2908_21_6
Type: CAZyme
Location: 6130 - 7668 (+)
Gene ID: HRGMv2_2908_21_7
Type: CAZyme
Location: 7693 - 8871 (+)
Gene ID: HRGMv2_2908_21_8
Type: CAZyme
Location: 8987 - 10024 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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