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Cluster: HRGMv2_2908_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2908_9 HRGMv2_2908_9_13 9890 10396 - 2.A.87.3.2
pfam HRGMv2_2908_9 HRGMv2_2908_9_14 10466 10852 - NusG_II
pfam HRGMv2_2908_9 HRGMv2_2908_9_15 10860 11921 - ApbE
TC HRGMv2_2908_9 HRGMv2_2908_9_16 12112 12729 - 2.A.115.2.14
TF HRGMv2_2908_9 HRGMv2_2908_9_17 12910 13677 + Trans_reg_C
TC HRGMv2_2908_9 HRGMv2_2908_9_18 13679 15199 + 2.A.21.9.2
TC HRGMv2_2908_9 HRGMv2_2908_9_19 15331 16170 + 3.A.1.132.3
TF HRGMv2_2908_9 HRGMv2_2908_9_20 16641 18935 + HTH_3
CAZyme HRGMv2_2908_9 HRGMv2_2908_9_21 19183 20850 - GH13_31
TC HRGMv2_2908_9 HRGMv2_2908_9_22 21106 22512 + 2.A.66.1.2
NULL(UNKNOWN) HRGMv2_2908_9 HRGMv2_2908_9_23 22538 23581 + NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_2908_9 HRGMv2_2908_9_24 23643 25229 - S09.UPW
CAZyme HRGMv2_2908_9 HRGMv2_2908_9_25 25275 26111 - CE1
CAZyme HRGMv2_2908_9 HRGMv2_2908_9_26 26165 27631 - GH13_18
TC HRGMv2_2908_9 HRGMv2_2908_9_27 27882 29627 + 9.B.33.1.2
TF HRGMv2_2908_9 HRGMv2_2908_9_28 29605 31182 + HTH_AraC
pfam HRGMv2_2908_9 HRGMv2_2908_9_29 31428 33053 + DUF3502
TC HRGMv2_2908_9 HRGMv2_2908_9_30 33185 34117 + 3.A.1.1.29
TC HRGMv2_2908_9 HRGMv2_2908_9_31 34132 35037 + 3.A.1.1.29
Gene ID: HRGMv2_2908_9_13
Type: TC
Location: 9890 - 10396 (-)
Gene ID: HRGMv2_2908_9_14
Type: pfam
Location: 10466 - 10852 (-)
Gene ID: HRGMv2_2908_9_15
Type: pfam
Location: 10860 - 11921 (-)
Gene ID: HRGMv2_2908_9_16
Type: TC
Location: 12112 - 12729 (-)
Gene ID: HRGMv2_2908_9_17
Type: TF
Location: 12910 - 13677 (+)
Gene ID: HRGMv2_2908_9_18
Type: TC
Location: 13679 - 15199 (+)
Gene ID: HRGMv2_2908_9_19
Type: TC
Location: 15331 - 16170 (+)
Gene ID: HRGMv2_2908_9_20
Type: TF
Location: 16641 - 18935 (+)
Gene ID: HRGMv2_2908_9_21
Type: CAZyme
Location: 19183 - 20850 (-)
Gene ID: HRGMv2_2908_9_22
Type: TC
Location: 21106 - 22512 (+)
Gene ID: HRGMv2_2908_9_23
Type:
Location: 22538 - 23581 (+)
Gene ID: HRGMv2_2908_9_24
Type: peptidase
Location: 23643 - 25229 (-)
Gene ID: HRGMv2_2908_9_25
Type: CAZyme
Location: 25275 - 26111 (-)
Gene ID: HRGMv2_2908_9_26
Type: CAZyme
Location: 26165 - 27631 (-)
Gene ID: HRGMv2_2908_9_27
Type: TC
Location: 27882 - 29627 (+)
Gene ID: HRGMv2_2908_9_28
Type: TF
Location: 29605 - 31182 (+)
Gene ID: HRGMv2_2908_9_29
Type: pfam
Location: 31428 - 33053 (+)
Gene ID: HRGMv2_2908_9_30
Type: TC
Location: 33185 - 34117 (+)
Gene ID: HRGMv2_2908_9_31
Type: TC
Location: 34132 - 35037 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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