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Cluster: HRGMv2_2908_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2908_6 HRGMv2_2908_6_18 19825 20676 - 3.A.1.1.39
TC HRGMv2_2908_6 HRGMv2_2908_6_19 20692 21591 - 3.A.1.1.36
TC HRGMv2_2908_6 HRGMv2_2908_6_20 21721 23055 - 3.A.1.1.40
TF HRGMv2_2908_6 HRGMv2_2908_6_21 23108 24982 - LacI
CAZyme HRGMv2_2908_6 HRGMv2_2908_6_22 25376 26185 - CE1
CAZyme HRGMv2_2908_6 HRGMv2_2908_6_23 26224 27033 - CE1
STP HRGMv2_2908_6 HRGMv2_2908_6_24 27178 28812 - HATPase_c
STP HRGMv2_2908_6 HRGMv2_2908_6_25 29074 30618 + SBP_bac_1
TC HRGMv2_2908_6 HRGMv2_2908_6_26 30679 31596 + 3.A.1.1.10
TC HRGMv2_2908_6 HRGMv2_2908_6_27 31612 32499 + 3.A.1.1.29
TF HRGMv2_2908_6 HRGMv2_2908_6_28 32500 34074 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2908_6 HRGMv2_2908_6_29 34493 36919 + GH3
Gene ID: HRGMv2_2908_6_18
Type: TC
Location: 19825 - 20676 (-)
Gene ID: HRGMv2_2908_6_19
Type: TC
Location: 20692 - 21591 (-)
Gene ID: HRGMv2_2908_6_20
Type: TC
Location: 21721 - 23055 (-)
Gene ID: HRGMv2_2908_6_21
Type: TF
Location: 23108 - 24982 (-)
Gene ID: HRGMv2_2908_6_22
Type: CAZyme
Location: 25376 - 26185 (-)
Gene ID: HRGMv2_2908_6_23
Type: CAZyme
Location: 26224 - 27033 (-)
Gene ID: HRGMv2_2908_6_24
Type: STP
Location: 27178 - 28812 (-)
Gene ID: HRGMv2_2908_6_25
Type: STP
Location: 29074 - 30618 (+)
Gene ID: HRGMv2_2908_6_26
Type: TC
Location: 30679 - 31596 (+)
Gene ID: HRGMv2_2908_6_27
Type: TC
Location: 31612 - 32499 (+)
Gene ID: HRGMv2_2908_6_28
Type: TF
Location: 32500 - 34074 (-)
Gene ID: HRGMv2_2908_6_29
Type: CAZyme
Location: 34493 - 36919 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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