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Cluster: HRGMv2_2907_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2907_3 HRGMv2_2907_3_6 10693 12891 + 3.A.3.5.15
TC HRGMv2_2907_3 HRGMv2_2907_3_7 13332 15152 - 3.A.16.1.2
TC HRGMv2_2907_3 HRGMv2_2907_3_8 15542 16903 + 2.A.26.1.3
TF HRGMv2_2907_3 HRGMv2_2907_3_9 17072 17545 + MarR
TC HRGMv2_2907_3 HRGMv2_2907_3_10 17542 19311 + 3.A.1.135.6
TC HRGMv2_2907_3 HRGMv2_2907_3_11 19313 21109 + 3.A.1.135.6
pfam HRGMv2_2907_3 HRGMv2_2907_3_12 21198 21830 - G3P_acyltransf
CAZyme HRGMv2_2907_3 HRGMv2_2907_3_13 21827 22933 - GT28
CAZyme HRGMv2_2907_3 HRGMv2_2907_3_14 23187 26558 + GH43_26
STP HRGMv2_2907_3 HRGMv2_2907_3_15 26725 27531 + LysR_substrate
TC HRGMv2_2907_3 HRGMv2_2907_3_16 27792 28661 + 3.A.1.7.1
TC HRGMv2_2907_3 HRGMv2_2907_3_17 28663 29526 + 3.A.1.7.2
TC HRGMv2_2907_3 HRGMv2_2907_3_18 29523 30275 + 3.A.1.7.5
Gene ID: HRGMv2_2907_3_6
Type: TC
Location: 10693 - 12891 (+)
Gene ID: HRGMv2_2907_3_7
Type: TC
Location: 13332 - 15152 (-)
Gene ID: HRGMv2_2907_3_8
Type: TC
Location: 15542 - 16903 (+)
Gene ID: HRGMv2_2907_3_9
Type: TF
Location: 17072 - 17545 (+)
Gene ID: HRGMv2_2907_3_10
Type: TC
Location: 17542 - 19311 (+)
Gene ID: HRGMv2_2907_3_11
Type: TC
Location: 19313 - 21109 (+)
Gene ID: HRGMv2_2907_3_12
Type: pfam
Location: 21198 - 21830 (-)
Gene ID: HRGMv2_2907_3_13
Type: CAZyme
Location: 21827 - 22933 (-)
Gene ID: HRGMv2_2907_3_14
Type: CAZyme
Location: 23187 - 26558 (+)
Gene ID: HRGMv2_2907_3_15
Type: STP
Location: 26725 - 27531 (+)
Gene ID: HRGMv2_2907_3_16
Type: TC
Location: 27792 - 28661 (+)
Gene ID: HRGMv2_2907_3_17
Type: TC
Location: 28663 - 29526 (+)
Gene ID: HRGMv2_2907_3_18
Type: TC
Location: 29523 - 30275 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
UMGS902
→
Species
UMGS902 sp934474225

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2907_3_10 vegetarian > vegan 1.65841 0.00141
HRGMv2_2907_3_11 vegetarian > vegan 1.02727 0.00141

🧭 Explore Read Mapping of CGC

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