Cluster: HRGMv2_2907_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2907
- CGC Family ID: CGCFAM_03842
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2907_2 | HRGMv2_2907_2_43 | 51578 | 52870 | + | GH18 |
| NULL(UNKNOWN) | HRGMv2_2907_2 | HRGMv2_2907_2_44 | 52962 | 53609 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2907_2 | HRGMv2_2907_2_45 | 54283 | 55053 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2907_2 | HRGMv2_2907_2_46 | 55189 | 57039 | - | GH146 |
| TF | HRGMv2_2907_2 | HRGMv2_2907_2_47 | 57235 | 57987 | + | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2907_2 | HRGMv2_2907_2_48 | 58182 | 59669 | + | SBP_bac_1 |
| CAZyme | HRGMv2_2907_2 | HRGMv2_2907_2_49 | 59679 | 62297 | + | GH43_26 |
| pfam | HRGMv2_2907_2 | HRGMv2_2907_2_50 | 62408 | 63502 | + | Epimerase_2 |
| NULL(UNKNOWN) | HRGMv2_2907_2 | HRGMv2_2907_2_51 | 63508 | 64725 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2907_2 | HRGMv2_2907_2_52 | 65304 | 66641 | + | 3.A.1.1.41 |
| TC | HRGMv2_2907_2 | HRGMv2_2907_2_53 | 66713 | 67699 | + | 3.A.1.1.7 |
| TC | HRGMv2_2907_2 | HRGMv2_2907_2_54 | 67714 | 68565 | + | 3.A.1.1.6 |
Gene ID: HRGMv2_2907_2_43
Type: CAZyme
Location: 51578 - 52870 (+)
Type: CAZyme
Location: 51578 - 52870 (+)
Gene ID: HRGMv2_2907_2_44
Type:
Location: 52962 - 53609 (+)
Type:
Location: 52962 - 53609 (+)
Gene ID: HRGMv2_2907_2_45
Type:
Location: 54283 - 55053 (+)
Type:
Location: 54283 - 55053 (+)
Gene ID: HRGMv2_2907_2_46
Type: CAZyme
Location: 55189 - 57039 (-)
Type: CAZyme
Location: 55189 - 57039 (-)
Gene ID: HRGMv2_2907_2_47
Type: TF
Location: 57235 - 57987 (+)
Type: TF
Location: 57235 - 57987 (+)
Gene ID: HRGMv2_2907_2_48
Type: STP
Location: 58182 - 59669 (+)
Type: STP
Location: 58182 - 59669 (+)
Gene ID: HRGMv2_2907_2_49
Type: CAZyme
Location: 59679 - 62297 (+)
Type: CAZyme
Location: 59679 - 62297 (+)
Gene ID: HRGMv2_2907_2_50
Type: pfam
Location: 62408 - 63502 (+)
Type: pfam
Location: 62408 - 63502 (+)
Gene ID: HRGMv2_2907_2_51
Type:
Location: 63508 - 64725 (+)
Type:
Location: 63508 - 64725 (+)
Gene ID: HRGMv2_2907_2_52
Type: TC
Location: 65304 - 66641 (+)
Type: TC
Location: 65304 - 66641 (+)
Gene ID: HRGMv2_2907_2_53
Type: TC
Location: 66713 - 67699 (+)
Type: TC
Location: 66713 - 67699 (+)
Gene ID: HRGMv2_2907_2_54
Type: TC
Location: 67714 - 68565 (+)
Type: TC
Location: 67714 - 68565 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS902
Species
UMGS902 sp934474225
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.