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Cluster: HRGMv2_2907_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2907_16 HRGMv2_2907_16_3 1463 3199 + GH129
CAZyme HRGMv2_2907_16 HRGMv2_2907_16_4 3196 5001 + GH43_33
pfam HRGMv2_2907_16 HRGMv2_2907_16_5 5031 6572 + SLH | SLH
CAZyme HRGMv2_2907_16 HRGMv2_2907_16_6 6745 8181 + GH43_33
TF HRGMv2_2907_16 HRGMv2_2907_16_7 8382 9398 + LacI
TC HRGMv2_2907_16 HRGMv2_2907_16_8 9815 11320 + 3.A.1.2.3
TC HRGMv2_2907_16 HRGMv2_2907_16_9 11332 12315 + 3.A.1.2.1
TC HRGMv2_2907_16 HRGMv2_2907_16_10 12388 13476 + 3.A.1.2.7
Gene ID: HRGMv2_2907_16_3
Type: CAZyme
Location: 1463 - 3199 (+)
Gene ID: HRGMv2_2907_16_4
Type: CAZyme
Location: 3196 - 5001 (+)
Gene ID: HRGMv2_2907_16_5
Type: pfam
Location: 5031 - 6572 (+)
Gene ID: HRGMv2_2907_16_6
Type: CAZyme
Location: 6745 - 8181 (+)
Gene ID: HRGMv2_2907_16_7
Type: TF
Location: 8382 - 9398 (+)
Gene ID: HRGMv2_2907_16_8
Type: TC
Location: 9815 - 11320 (+)
Gene ID: HRGMv2_2907_16_9
Type: TC
Location: 11332 - 12315 (+)
Gene ID: HRGMv2_2907_16_10
Type: TC
Location: 12388 - 13476 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
UMGS902
→
Species
UMGS902 sp934474225

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2907_16_8 vegetarian > vegan 1.20621 0.00141

🧭 Explore Read Mapping of CGC

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