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Cluster: HRGMv2_2899_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2899_1 HRGMv2_2899_1_337 351487 354597 - GH106
pfam HRGMv2_2899_1 HRGMv2_2899_1_338 354784 355506 + Acyl-ACP_TE | Acyl-ACP_TE_C
STP HRGMv2_2899_1 HRGMv2_2899_1_339 356213 356827 + TetR_N
TC HRGMv2_2899_1 HRGMv2_2899_1_340 356944 358719 + 3.A.1.21.1
TC HRGMv2_2899_1 HRGMv2_2899_1_341 358716 360452 + 3.A.1.135.5
STP HRGMv2_2899_1 HRGMv2_2899_1_342 360543 361142 - TetR_N
TC HRGMv2_2899_1 HRGMv2_2899_1_343 361290 361991 + 3.A.1.122.14
Gene ID: HRGMv2_2899_1_337
Type: CAZyme
Location: 351487 - 354597 (-)
Gene ID: HRGMv2_2899_1_338
Type: pfam
Location: 354784 - 355506 (+)
Gene ID: HRGMv2_2899_1_339
Type: STP
Location: 356213 - 356827 (+)
Gene ID: HRGMv2_2899_1_340
Type: TC
Location: 356944 - 358719 (+)
Gene ID: HRGMv2_2899_1_341
Type: TC
Location: 358716 - 360452 (+)
Gene ID: HRGMv2_2899_1_342
Type: STP
Location: 360543 - 361142 (-)
Gene ID: HRGMv2_2899_1_343
Type: TC
Location: 361290 - 361991 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
QALR01
→
Species
QALR01 sp900553085

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2899_1_337 vegetarian > vegan 17.68336 0.00749

🧭 Explore Read Mapping of CGC

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