Cluster: HRGMv2_2898_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2898
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2898_3 | HRGMv2_2898_3_55 | 56103 | 57404 | + | 9.B.33.1.1 |
| TF | HRGMv2_2898_3 | HRGMv2_2898_3_56 | 57401 | 58138 | + | HTH_AraC | HTH_AraC |
| TF | HRGMv2_2898_3 | HRGMv2_2898_3_57 | 58194 | 58385 | + | PspC |
| TC | HRGMv2_2898_3 | HRGMv2_2898_3_58 | 58404 | 59318 | + | 3.A.1.105.9 |
| pfam | HRGMv2_2898_3 | HRGMv2_2898_3_59 | 59315 | 60229 | + | ABC2_membrane | ABC2_membrane_3 |
| NULL(UNKNOWN) | HRGMv2_2898_3 | HRGMv2_2898_3_60 | 60273 | 60404 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2898_3 | HRGMv2_2898_3_61 | 60435 | 61118 | + | 9.B.116.3.1 |
| pfam | HRGMv2_2898_3 | HRGMv2_2898_3_62 | 61115 | 61927 | + | DUF4097 |
| TF | HRGMv2_2898_3 | HRGMv2_2898_3_63 | 62578 | 63414 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2898_3 | HRGMv2_2898_3_64 | 63573 | 65888 | + | GH2 |
| pfam | HRGMv2_2898_3 | HRGMv2_2898_3_65 | 66045 | 67013 | + | PBP_like_2 | PBP_like_2 |
| TC | HRGMv2_2898_3 | HRGMv2_2898_3_66 | 67017 | 68837 | + | 3.A.1.7.5 |
| TC | HRGMv2_2898_3 | HRGMv2_2898_3_67 | 68840 | 69622 | + | 3.A.1.7.5 |
Gene ID: HRGMv2_2898_3_55
Type: TC
Location: 56103 - 57404 (+)
Type: TC
Location: 56103 - 57404 (+)
Gene ID: HRGMv2_2898_3_56
Type: TF
Location: 57401 - 58138 (+)
Type: TF
Location: 57401 - 58138 (+)
Gene ID: HRGMv2_2898_3_57
Type: TF
Location: 58194 - 58385 (+)
Type: TF
Location: 58194 - 58385 (+)
Gene ID: HRGMv2_2898_3_58
Type: TC
Location: 58404 - 59318 (+)
Type: TC
Location: 58404 - 59318 (+)
Gene ID: HRGMv2_2898_3_59
Type: pfam
Location: 59315 - 60229 (+)
Type: pfam
Location: 59315 - 60229 (+)
Gene ID: HRGMv2_2898_3_60
Type:
Location: 60273 - 60404 (+)
Type:
Location: 60273 - 60404 (+)
Gene ID: HRGMv2_2898_3_61
Type: TC
Location: 60435 - 61118 (+)
Type: TC
Location: 60435 - 61118 (+)
Gene ID: HRGMv2_2898_3_62
Type: pfam
Location: 61115 - 61927 (+)
Type: pfam
Location: 61115 - 61927 (+)
Gene ID: HRGMv2_2898_3_63
Type: TF
Location: 62578 - 63414 (-)
Type: TF
Location: 62578 - 63414 (-)
Gene ID: HRGMv2_2898_3_64
Type: CAZyme
Location: 63573 - 65888 (+)
Type: CAZyme
Location: 63573 - 65888 (+)
Gene ID: HRGMv2_2898_3_65
Type: pfam
Location: 66045 - 67013 (+)
Type: pfam
Location: 66045 - 67013 (+)
Gene ID: HRGMv2_2898_3_66
Type: TC
Location: 67017 - 68837 (+)
Type: TC
Location: 67017 - 68837 (+)
Gene ID: HRGMv2_2898_3_67
Type: TC
Location: 68840 - 69622 (+)
Type: TC
Location: 68840 - 69622 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UBA737
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.