Cluster: HRGMv2_2896_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- CGC Family ID: CGCFAM_10215
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2896_5 | HRGMv2_2896_5_50 | 64332 | 66086 | + | 4.C.1.1.4 |
| CAZyme | HRGMv2_2896_5 | HRGMv2_2896_5_51 | 66151 | 66918 | - | CE14 |
| TC | HRGMv2_2896_5 | HRGMv2_2896_5_52 | 66915 | 68396 | - | 2.A.2.2.3 |
Gene ID: HRGMv2_2896_5_50
Type: TC
Location: 64332 - 66086 (+)
Type: TC
Location: 64332 - 66086 (+)
Gene ID: HRGMv2_2896_5_51
Type: CAZyme
Location: 66151 - 66918 (-)
Type: CAZyme
Location: 66151 - 66918 (-)
Gene ID: HRGMv2_2896_5_52
Type: TC
Location: 66915 - 68396 (-)
Type: TC
Location: 66915 - 68396 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_5_51 | vegetarian > omnivore | 1.58634 | 0.00454 |
| HRGMv2_2896_5_51 | vegetarian > vegan | 1.81811 | 0.00701 |
| HRGMv2_2896_5_52 | vegetarian > omnivore | 1.71004 | 0.00454 |
| HRGMv2_2896_5_52 | vegetarian > vegan | 1.48037 | 0.00701 |