Cluster: HRGMv2_2896_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2896
- CGC Family ID: CGCFAM_00761
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2896_4 | HRGMv2_2896_4_71 | 69183 | 71582 | - | GH13_39 |
| CAZyme | HRGMv2_2896_4 | HRGMv2_2896_4_72 | 71570 | 73048 | - | GT5 |
| pfam | HRGMv2_2896_4 | HRGMv2_2896_4_73 | 73077 | 74285 | - | PDDEXK_4 |
| CAZyme | HRGMv2_2896_4 | HRGMv2_2896_4_74 | 74303 | 76207 | - | CBM48 | GH13_9 |
| TC | HRGMv2_2896_4 | HRGMv2_2896_4_75 | 76641 | 78632 | + | 3.A.10.1.5 |
Gene ID: HRGMv2_2896_4_71
Type: CAZyme
Location: 69183 - 71582 (-)
Type: CAZyme
Location: 69183 - 71582 (-)
Gene ID: HRGMv2_2896_4_72
Type: CAZyme
Location: 71570 - 73048 (-)
Type: CAZyme
Location: 71570 - 73048 (-)
Gene ID: HRGMv2_2896_4_73
Type: pfam
Location: 73077 - 74285 (-)
Type: pfam
Location: 73077 - 74285 (-)
Gene ID: HRGMv2_2896_4_74
Type: CAZyme
Location: 74303 - 76207 (-)
Type: CAZyme
Location: 74303 - 76207 (-)
Gene ID: HRGMv2_2896_4_75
Type: TC
Location: 76641 - 78632 (+)
Type: TC
Location: 76641 - 78632 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_4_71 | vegetarian > omnivore | 1.36501 | 0.00454 |
| HRGMv2_2896_4_73 | vegetarian > omnivore | 5.93512 | 0.00454 |
| HRGMv2_2896_4_73 | vegetarian > vegan | 2.13076 | 0.00701 |