Cluster: HRGMv2_2896_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- CGC Family ID: CGCFAM_10214
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2896_3 | HRGMv2_2896_3_92 | 86222 | 86725 | - | CE4 |
| NULL(UNKNOWN) | HRGMv2_2896_3 | HRGMv2_2896_3_93 | 87472 | 87981 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2896_3 | HRGMv2_2896_3_94 | 88092 | 89405 | + | MatE | MatE | Polysacc_synt |
| TC | HRGMv2_2896_3 | HRGMv2_2896_3_95 | 89353 | 90306 | - | 2.A.87.1.4 |
Gene ID: HRGMv2_2896_3_92
Type: CAZyme
Location: 86222 - 86725 (-)
Type: CAZyme
Location: 86222 - 86725 (-)
Gene ID: HRGMv2_2896_3_93
Type:
Location: 87472 - 87981 (-)
Type:
Location: 87472 - 87981 (-)
Gene ID: HRGMv2_2896_3_94
Type: pfam
Location: 88092 - 89405 (+)
Type: pfam
Location: 88092 - 89405 (+)
Gene ID: HRGMv2_2896_3_95
Type: TC
Location: 89353 - 90306 (-)
Type: TC
Location: 89353 - 90306 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_3_93 | vegetarian > omnivore | 1.62287 | 0.00454 |
| HRGMv2_2896_3_94 | vegetarian > omnivore | 1.80364 | 0.00454 |
| HRGMv2_2896_3_94 | vegetarian > vegan | 1.28464 | 0.00701 |