Cluster: HRGMv2_2896_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2896_2 | HRGMv2_2896_2_109 | 117375 | 117599 | + | 3.D.1.6.1 |
| pfam | HRGMv2_2896_2 | HRGMv2_2896_2_110 | 117667 | 118215 | - | DivIVA |
| peptidase | HRGMv2_2896_2 | HRGMv2_2896_2_111 | 118291 | 119328 | - | M42.UNW |
| CAZyme | HRGMv2_2896_2 | HRGMv2_2896_2_112 | 119442 | 120722 | + | GH13 |
Gene ID: HRGMv2_2896_2_109
Type: TC
Location: 117375 - 117599 (+)
Type: TC
Location: 117375 - 117599 (+)
Gene ID: HRGMv2_2896_2_110
Type: pfam
Location: 117667 - 118215 (-)
Type: pfam
Location: 117667 - 118215 (-)
Gene ID: HRGMv2_2896_2_111
Type: peptidase
Location: 118291 - 119328 (-)
Type: peptidase
Location: 118291 - 119328 (-)
Gene ID: HRGMv2_2896_2_112
Type: CAZyme
Location: 119442 - 120722 (+)
Type: CAZyme
Location: 119442 - 120722 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_2_109 | vegetarian > omnivore | 1.80565 | 0.00454 |
| HRGMv2_2896_2_109 | vegetarian > vegan | 1.27298 | 0.00701 |
| HRGMv2_2896_2_110 | vegetarian > omnivore | 1.69794 | 0.00454 |
| HRGMv2_2896_2_110 | vegetarian > vegan | 1.28215 | 0.00701 |
| HRGMv2_2896_2_112 | vegetarian > omnivore | 1.27765 | 0.00454 |
| HRGMv2_2896_2_112 | vegetarian > vegan | 1.35717 | 0.00701 |