Cluster: HRGMv2_2896_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2896_2 | HRGMv2_2896_2_22 | 22752 | 25403 | - | CBM67 | GH78 |
| pfam | HRGMv2_2896_2 | HRGMv2_2896_2_23 | 25735 | 26406 | + | Asp_Glu_race |
| CAZyme | HRGMv2_2896_2 | HRGMv2_2896_2_24 | 26446 | 28440 | + | GH127 |
| TC | HRGMv2_2896_2 | HRGMv2_2896_2_25 | 28499 | 29614 | + | 2.A.56.2.1 |
| pfam | HRGMv2_2896_2 | HRGMv2_2896_2_26 | 29699 | 30274 | + | DctQ |
| TC | HRGMv2_2896_2 | HRGMv2_2896_2_27 | 30274 | 31557 | + | 2.A.56.1.6 |
Gene ID: HRGMv2_2896_2_22
Type: CAZyme
Location: 22752 - 25403 (-)
Type: CAZyme
Location: 22752 - 25403 (-)
Gene ID: HRGMv2_2896_2_23
Type: pfam
Location: 25735 - 26406 (+)
Type: pfam
Location: 25735 - 26406 (+)
Gene ID: HRGMv2_2896_2_24
Type: CAZyme
Location: 26446 - 28440 (+)
Type: CAZyme
Location: 26446 - 28440 (+)
Gene ID: HRGMv2_2896_2_25
Type: TC
Location: 28499 - 29614 (+)
Type: TC
Location: 28499 - 29614 (+)
Gene ID: HRGMv2_2896_2_26
Type: pfam
Location: 29699 - 30274 (+)
Type: pfam
Location: 29699 - 30274 (+)
Gene ID: HRGMv2_2896_2_27
Type: TC
Location: 30274 - 31557 (+)
Type: TC
Location: 30274 - 31557 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.