dbCAN Logo

Cluster: HRGMv2_2896_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2896_50 HRGMv2_2896_50_2 1592 3127 + 3.A.1.2.17
TC HRGMv2_2896_50 HRGMv2_2896_50_3 3124 4218 + 3.A.1.2.12
TC HRGMv2_2896_50 HRGMv2_2896_50_4 4211 5155 + 3.A.1.2.18
TF HRGMv2_2896_50 HRGMv2_2896_50_5 5536 6549 + LacI
TC HRGMv2_2896_50 HRGMv2_2896_50_6 6622 7962 + 3.A.1.1.45
TC HRGMv2_2896_50 HRGMv2_2896_50_7 8135 9289 + 3.A.1.1.45
TC HRGMv2_2896_50 HRGMv2_2896_50_8 9289 10164 + 3.A.1.1.45
CAZyme HRGMv2_2896_50 HRGMv2_2896_50_9 10190 11698 + GH77
Gene ID: HRGMv2_2896_50_2
Type: TC
Location: 1592 - 3127 (+)
Gene ID: HRGMv2_2896_50_3
Type: TC
Location: 3124 - 4218 (+)
Gene ID: HRGMv2_2896_50_4
Type: TC
Location: 4211 - 5155 (+)
Gene ID: HRGMv2_2896_50_5
Type: TF
Location: 5536 - 6549 (+)
Gene ID: HRGMv2_2896_50_6
Type: TC
Location: 6622 - 7962 (+)
Gene ID: HRGMv2_2896_50_7
Type: TC
Location: 8135 - 9289 (+)
Gene ID: HRGMv2_2896_50_8
Type: TC
Location: 9289 - 10164 (+)
Gene ID: HRGMv2_2896_50_9
Type: CAZyme
Location: 10190 - 11698 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2896_50_5 vegetarian > omnivore 1.50726 0.00454
HRGMv2_2896_50_5 vegetarian > vegan 1.37454 0.00701

🧭 Explore Read Mapping of CGC

← Back to Cluster List