Cluster: HRGMv2_2896_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2896_32 | HRGMv2_2896_32_5 | 4856 | 5431 | + | 4.F.1.1.7 |
| pfam | HRGMv2_2896_32 | HRGMv2_2896_32_6 | 5441 | 5914 | + | CrtO |
| CAZyme | HRGMv2_2896_32 | HRGMv2_2896_32_7 | 5915 | 7042 | + | GT28 |
Gene ID: HRGMv2_2896_32_5
Type: TC
Location: 4856 - 5431 (+)
Type: TC
Location: 4856 - 5431 (+)
Gene ID: HRGMv2_2896_32_6
Type: pfam
Location: 5441 - 5914 (+)
Type: pfam
Location: 5441 - 5914 (+)
Gene ID: HRGMv2_2896_32_7
Type: CAZyme
Location: 5915 - 7042 (+)
Type: CAZyme
Location: 5915 - 7042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_32_5 | vegetarian > omnivore | 1.19144 | 0.00454 |
| HRGMv2_2896_32_5 | vegetarian > vegan | 1.97389 | 0.00701 |
| HRGMv2_2896_32_6 | vegetarian > omnivore | 1.73223 | 0.00454 |
| HRGMv2_2896_32_6 | vegetarian > vegan | 1.75297 | 0.00701 |
| HRGMv2_2896_32_7 | vegetarian > omnivore | 1.37469 | 0.00454 |
| HRGMv2_2896_32_7 | vegetarian > vegan | 1.17590 | 0.00701 |