Cluster: HRGMv2_2896_CGC15
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2896_29 | HRGMv2_2896_29_16 | 15216 | 16343 | - | GT28 |
| TC | HRGMv2_2896_29 | HRGMv2_2896_29_17 | 16373 | 17530 | - | 2.A.103.1.3 |
| TC | HRGMv2_2896_29 | HRGMv2_2896_29_18 | 17562 | 18575 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_2896_29_16
Type: CAZyme
Location: 15216 - 16343 (-)
Type: CAZyme
Location: 15216 - 16343 (-)
Gene ID: HRGMv2_2896_29_17
Type: TC
Location: 16373 - 17530 (-)
Type: TC
Location: 16373 - 17530 (-)
Gene ID: HRGMv2_2896_29_18
Type: TC
Location: 17562 - 18575 (-)
Type: TC
Location: 17562 - 18575 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_29_16 | vegetarian > omnivore | 1.83286 | 0.00454 |
| HRGMv2_2896_29_16 | vegetarian > vegan | 1.02441 | 0.00701 |
| HRGMv2_2896_29_18 | vegetarian > omnivore | 1.29235 | 0.00454 |