Cluster: HRGMv2_2896_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2896_21 | HRGMv2_2896_21_16 | 9164 | 10501 | + | 2.A.25.1.9 |
| peptidase | HRGMv2_2896_21 | HRGMv2_2896_21_17 | 10634 | 11134 | - | M95.UPW |
| pfam | HRGMv2_2896_21 | HRGMv2_2896_21_18 | 11137 | 11964 | - | Radical_SAM | SPASM |
| CAZyme | HRGMv2_2896_21 | HRGMv2_2896_21_19 | 12021 | 13715 | - | GH2 |
Gene ID: HRGMv2_2896_21_16
Type: TC
Location: 9164 - 10501 (+)
Type: TC
Location: 9164 - 10501 (+)
Gene ID: HRGMv2_2896_21_17
Type: peptidase
Location: 10634 - 11134 (-)
Type: peptidase
Location: 10634 - 11134 (-)
Gene ID: HRGMv2_2896_21_18
Type: pfam
Location: 11137 - 11964 (-)
Type: pfam
Location: 11137 - 11964 (-)
Gene ID: HRGMv2_2896_21_19
Type: CAZyme
Location: 12021 - 13715 (-)
Type: CAZyme
Location: 12021 - 13715 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_21_17 | vegetarian > omnivore | 1.50674 | 0.00454 |
| HRGMv2_2896_21_17 | vegetarian > vegan | 1.81269 | 0.00701 |
| HRGMv2_2896_21_18 | vegetarian > omnivore | 1.57079 | 0.00454 |
| HRGMv2_2896_21_18 | vegetarian > vegan | 1.72495 | 0.00701 |