Cluster: HRGMv2_2896_CGC13
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2896
- CGC Family ID: CGCFAM_00430
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2896_19 | HRGMv2_2896_19_8 | 9641 | 11155 | - | GH3 |
| CAZyme | HRGMv2_2896_19 | HRGMv2_2896_19_9 | 11189 | 12325 | - | GH171 |
| pfam | HRGMv2_2896_19 | HRGMv2_2896_19_10 | 12777 | 13964 | + | AnmK |
| CAZyme | HRGMv2_2896_19 | HRGMv2_2896_19_11 | 14249 | 14998 | - | CE1 |
| STP | HRGMv2_2896_19 | HRGMv2_2896_19_12 | 14998 | 15906 | - | SIS |
| CAZyme | HRGMv2_2896_19 | HRGMv2_2896_19_13 | 15903 | 16637 | - | CE14 |
| pfam | HRGMv2_2896_19 | HRGMv2_2896_19_14 | 17017 | 17988 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| TC | HRGMv2_2896_19 | HRGMv2_2896_19_15 | 18186 | 19055 | - | 3.A.1.1.39 |
| TC | HRGMv2_2896_19 | HRGMv2_2896_19_16 | 19069 | 19980 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_2896_19_8
Type: CAZyme
Location: 9641 - 11155 (-)
Type: CAZyme
Location: 9641 - 11155 (-)
Gene ID: HRGMv2_2896_19_9
Type: CAZyme
Location: 11189 - 12325 (-)
Type: CAZyme
Location: 11189 - 12325 (-)
Gene ID: HRGMv2_2896_19_10
Type: pfam
Location: 12777 - 13964 (+)
Type: pfam
Location: 12777 - 13964 (+)
Gene ID: HRGMv2_2896_19_11
Type: CAZyme
Location: 14249 - 14998 (-)
Type: CAZyme
Location: 14249 - 14998 (-)
Gene ID: HRGMv2_2896_19_12
Type: STP
Location: 14998 - 15906 (-)
Type: STP
Location: 14998 - 15906 (-)
Gene ID: HRGMv2_2896_19_13
Type: CAZyme
Location: 15903 - 16637 (-)
Type: CAZyme
Location: 15903 - 16637 (-)
Gene ID: HRGMv2_2896_19_14
Type: pfam
Location: 17017 - 17988 (-)
Type: pfam
Location: 17017 - 17988 (-)
Gene ID: HRGMv2_2896_19_15
Type: TC
Location: 18186 - 19055 (-)
Type: TC
Location: 18186 - 19055 (-)
Gene ID: HRGMv2_2896_19_16
Type: TC
Location: 19069 - 19980 (-)
Type: TC
Location: 19069 - 19980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_19_8 | vegetarian > omnivore | 1.00428 | 0.00454 |
| HRGMv2_2896_19_8 | vegetarian > vegan | 1.43414 | 0.00701 |
| HRGMv2_2896_19_9 | vegetarian > omnivore | 1.73610 | 0.00454 |
| HRGMv2_2896_19_9 | vegetarian > vegan | 1.25630 | 0.00701 |
| HRGMv2_2896_19_10 | vegetarian > omnivore | 1.51035 | 0.00454 |
| HRGMv2_2896_19_10 | vegetarian > vegan | 1.41991 | 0.00701 |
| HRGMv2_2896_19_11 | vegetarian > omnivore | 1.74050 | 0.00454 |
| HRGMv2_2896_19_11 | vegetarian > vegan | 1.08772 | 0.00701 |
| HRGMv2_2896_19_12 | vegetarian > omnivore | 1.08508 | 0.00454 |
| HRGMv2_2896_19_13 | vegetarian > omnivore | 1.30270 | 0.00454 |
| HRGMv2_2896_19_13 | vegetarian > vegan | 1.14957 | 0.00701 |
| HRGMv2_2896_19_14 | vegetarian > omnivore | 1.63943 | 0.00454 |
| HRGMv2_2896_19_14 | vegetarian > vegan | 1.46131 | 0.00701 |
| HRGMv2_2896_19_15 | vegetarian > vegan | 1.42599 | 0.00701 |